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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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INTS3
integrator complex subunit 3
Chromosome 1 · 1q21.3
NCBI Gene: 65123Ensembl: ENSG00000143624.15HGNC: HGNC:26153UniProt: Q68E01
92PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHighly ConstrainedHomologous Recombination
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingdouble-strand break repair via homologous recombinationDNA repairDNA damage response
✦AI Summary

INTS3 (integrator complex subunit 3) functions as a critical scaffold component of the SOSS (sensor of single-stranded DNA) complex, playing dual roles in DNA damage response and transcriptional regulation. In DNA repair, INTS3 stabilizes the heterotrimeric SOSS1 complex with hSSB1 and C9ORF80, facilitating homologous recombination-dependent repair of double-strand breaks and ATM-dependent checkpoint signaling 1. INTS3's N-terminal domain scaffolds complex assembly, while its C-terminal HEAT-repeat domain binds single-stranded nucleic acids and interacts with INTS6 to maintain protein stability 2. The tetrameric INTS6-SOSS1 complex containing INTS3 recruits phosphatase PP2A to dephosphorylate RNA polymerase II and resolve DNA:RNA hybrids at break sites, facilitating efficient repair 3. In transcriptional control, INTS3 participates in Integrator-mediated RNA polymerase II termination, where it prevents Pol II rebinding after transcript cleavage 4. Disease relevance is evidenced in acute myeloid leukemia, where aberrant INTS3 splicing driven by coordinated IDH2 and SRSF2 mutations promotes leukaemogenesis through RNA polymerase II stalling 5. INTS3 represents a potential therapeutic target in cancers with elevated DNA repair activity, as disrupting its interaction with hSSB1 can impair SOSS1 complex function 6.

Sources cited
1
INTS3 scaffolds the SOSS complex assembly with hSSB1 and C9ORF80, required for homologous recombination repair of DSBs and ATM-dependent signaling
PMID: 19605351
2
INTS3 C-terminal domain has HEAT-repeat structure, exists as dimer, binds ssRNA/ssDNA and INTS6, and is critical for nucleic acid recognition and protein stability
PMID: 33434574
3
Tetrameric INTS6-SOSS1 complex containing INTS3 recruits PP2A to dephosphorylate RNAPII and resolve DNA:RNA hybrids at DSBs
PMID: 39445827
4
INTS3 in the Integrator-PP2A complex prevents Pol II rebinding to Integrator after transcriptional termination
PMID: 38570683
5
Aberrant INTS3 splicing driven by IDH2 and SRSF2 mutations contributes to leukaemogenesis through increased RNAPII stalling
PMID: 31578525
6
INTS3-hSSB1 interaction is a potential drug target; compounds disrupting this interface impair recruitment to damaged chromatin
PMID: 38405517
7
INTS3 displays higher affinity for ssRNA than ssDNA, requires minimum 30 nucleotides for binding, and regulates nucleic acid-binding ability of hSSB complexes
PMID: 29150435
8
hSSB1-INTS3 complex recruits ATR-ATRIP checkpoint complex to sites of genomic stress in RPA-deficient cells
PMID: 25916848
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZNF592Protein interaction100%ZMYND8Protein interaction100%INTS13Protein interaction100%INTS12Protein interaction100%ZNF687Protein interaction100%RUVBL1Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
INTS3ZNF592ZMYND8INTS13INTS12ZNF687RUVBL1
PROTEIN STRUCTURE
Preparing viewer…
PDB4OWT · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.34Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.25 [0.19–0.34]
RankingsWhere INTS3 stands among ~20K protein-coding genes
  • #5,192of 20,598
    Most Researched92
  • #1,484of 17,882
    Most Constrained (LOEUF)0.34 · top 10%
Genes detectedINTS3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Coordinated alterations in RNA splicing and epigenetic regulation drive leukaemogenesis.
PMID: 31578525
Nature · 2019
1.00
2
Structural basis of Integrator-dependent RNA polymerase II termination.
PMID: 38570683
Nature · 2024
0.90
3
Tetrameric INTS6-SOSS1 complex facilitates DNA:RNA hybrid autoregulation at double-strand breaks.
PMID: 39445827
Nucleic Acids Res · 2024
0.80
4
Biochemical characterization of INTS3 and C9ORF80, two subunits of hNABP1/2 heterotrimeric complex in nucleic acid binding.
PMID: 29150435
Biochem J · 2018
0.70
5
Structural basis for multifunctional roles of human Ints3 C-terminal domain.
PMID: 33434574
J Biol Chem · 2021
0.60