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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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INTS12
integrator complex subunit 12
Chromosome 4 · 4q24
NCBI Gene: 57117Ensembl: ENSG00000138785.17HGNC: HGNC:25067UniProt: Q96CB8
66PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsnRNA processingregulation of transcription elongation by RNA polymerase IIintegrator complexchronic obstructive pulmonary diseaseasthmalower respiratory tract diseaseCOVID-19
✦AI Summary

INTS12 (integrator complex subunit 12) is a component of the integrator complex that functions as a genome-wide transcriptional attenuator by regulating RNA polymerase II (RNAPII) elongation. The protein acts through multiple mechanisms including RNA cleavage and phosphatase modules to control transcriptional elongation 1. INTS12 binds throughout the genome at transcriptionally active regions and regulates protein synthesis pathways, with knockdown leading to decreased protein translation and dysregulation of genes relevant to airway biology 2. Beyond its canonical role in snRNA processing, INTS12 demonstrates context-dependent functions in maintaining genome integrity by linking ribotoxic stress responses to transcription-coupled nucleotide excision repair through interaction with CSB and facilitating RNAPII clearance 3. The gene shows clinical significance in respiratory health, as genetic variants at the INTS12-GSTCD locus on chromosome 4 are associated with lung function measures including FEV1, with INTS12 expression correlating with lung function parameters 42. Additionally, INTS12 has been implicated in cancer therapy resistance, where it mediates resistance to CAR T-cell therapy in pancreatic cancer through transcriptional regulatory mechanisms 5. The protein is predominantly expressed in epithelial cells and pneumocytes in lung tissue 6.

Sources cited
1
INTS12 functions as a genome-wide transcriptional attenuator through RNA cleavage and phosphatase modules
PMID: 40207620
2
INTS12 binds throughout the genome at transcriptionally active regions and regulates protein synthesis pathways
PMID: 28335732
3
INTS12 links ribotoxic stress responses to transcription-coupled nucleotide excision repair through CSB interaction
PMID: 41748916
4
Genetic variants at INTS12-GSTCD locus are associated with lung function measures including FEV1
PMID: 20010835
5
INTS12 mediates resistance to CAR T-cell therapy in pancreatic cancer
PMID: 36548402
6
INTS12 is predominantly expressed in epithelial cells and pneumocytes in lung tissue
PMID: 24058608
Disease Associationsⓘ20
chronic obstructive pulmonary diseaseOpen Targets
0.24Weak
asthmaOpen Targets
0.22Weak
lower respiratory tract diseaseOpen Targets
0.16Weak
COVID-19Open Targets
0.16Weak
prostate carcinomaOpen Targets
0.14Weak
adolescent idiopathic scoliosisOpen Targets
0.08Suggestive
ovarian neoplasmOpen Targets
0.07Suggestive
Chronic Obstructive AsthmaOpen Targets
0.07Suggestive
Autosomal dominant primary hypomagnesemia with hypocalciuriaOpen Targets
0.06Suggestive
familial primary hypomagnesemia with normocalciuria and normocalcemiaOpen Targets
0.06Suggestive
isolated asymptomatic elevation of creatine phosphokinaseOpen Targets
0.05Suggestive
intestinal hypomagnesemia 1Open Targets
0.05Suggestive
Primary hypomagnesemia with secondary hypocalcemiaOpen Targets
0.05Suggestive
IRIDA syndromeOpen Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
hypertriglyceridemia 2Open Targets
0.04Suggestive
Rh deficiency syndromeOpen Targets
0.04Suggestive
hemolytic anemia due to erythrocyte adenosine deaminase overproductionOpen Targets
0.04Suggestive
Hemolytic anemia due to red cell pyruvate kinase deficiencyOpen Targets
0.04Suggestive
hypoparathyroidism, familial isolated, 2Open Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INTS5Protein interaction100%INTS14Protein interaction100%INTS3Protein interaction100%POLR2AProtein interaction100%INTS2Protein interaction98%INTS11Protein interaction96%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
84%
Lung
64%
Brain
61%
Liver
60%
Ovary
42%
Gene Interaction Network
Click a node to explore
INTS12INTS5INTS14INTS3POLR2AINTS2INTS11
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q96CB8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.53Moderately Constrained
pLIⓘ
0.94Intolerant
Observed/Expected LoF0.33 [0.22–0.53]
RankingsWhere INTS12 stands among ~20K protein-coding genes
  • #7,076of 20,598
    Most Researched66
  • #3,340of 17,882
    Most Constrained (LOEUF)0.53 · top quartile
Genes detectedINTS12
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
GSTCD and INTS12 regulation and expression in the human lung.
PMID: 24058608
PLoS One · 2013
1.00
2
Integrator complex subunit 12 knockout overcomes a transcriptional block to HIV latency reversal.
PMID: 40207620
Elife · 2025
0.90
3
Integrator complex subunit 12 knockout overcomes a transcriptional block to HIV latency reversal.
PMID: 39257755
bioRxiv · 2025
0.80
4
Integrator subunit INTS12 links ribotoxic stress to transcription-coupled nucleotide excision repair.
PMID: 41748916
Nat Struct Mol Biol · 2026
0.70
5
Lung function associated gene Integrator Complex subunit 12 regulates protein synthesis pathways.
PMID: 28335732
BMC Genomics · 2017
0.60