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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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INTS13
integrator complex subunit 13
Chromosome 12 · 12p11.23
NCBI Gene: 55726Ensembl: ENSG00000064102.16HGNC: HGNC:20174UniProt: Q9NVM9
67PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
integrator complexINTAC complexprotein localization to nuclear envelopeprotein bindingorofaciodigital syndrome Iorofaciodigital syndromeovarian dysfunctioncervical cancer
✦AI Summary

INTS13 is a core component of the Integrator complex that regulates RNA polymerase II transcription termination and transcriptional quality control 1. As part of the INTS10-INTS13-INTS14-INTS15 tail module, INTS13 adopts a scorpion-tail-shaped structure that facilitates transcription termination by opening the DSIF DNA clamp and promoting polymerase release from DNA 1. The protein functions as a platform for recruiting transcription factors at promoters, with specific interactions identified with ZNF655 and the EGR1/2-NAB2 axis 23. INTS13 binds nucleic acids through the INTS10-INTS13-INTS14 module, showing preference for RNA hairpins, and directly connects to the Integrator cleavage module via its conserved C-terminal motif 4. Beyond transcriptional regulation, INTS13 plays essential roles in ciliogenesis and development, with mutations causing autosomal recessive ciliopathies characterized by oral-facial-digital syndrome features 5. The protein is significantly overexpressed in multiple cancer types, including cervical cancer, where it promotes malignant phenotypes through the ZNF384-INTS13-hnRNPC signaling axis 6. INTS13 also functions in cell cycle regulation, mediating dynein recruitment to the nuclear envelope and contributing to proper spindle formation during mitosis.

Sources cited
1
INTS13 is part of the scorpion-tail-shaped module that facilitates RNA polymerase II transcription termination
PMID: 38570683
2
INTS13 acts as a platform for transcription factor recruitment, specifically interacting with ZNF655
PMID: 38823386
3
INTS13 targets enhancers through EGR1/2 transcription factors and NAB2 co-factor in monocytic differentiation
PMID: 30008316
4
INTS10-INTS13-INTS14 module binds nucleic acids with preference for RNA hairpins and connects to the cleavage module
PMID: 32647223
5
INTS13 mutations cause autosomal recessive ciliopathy with oral-facial-digital syndrome features
PMID: 36229431
6
INTS13 is overexpressed in cervical cancer and promotes malignancy through the ZNF384-INTS13-hnRNPC axis
PMID: 41429980
Disease Associationsⓘ20
orofaciodigital syndromeOpen Targets
0.18Weak
orofaciodigital syndrome IOpen Targets
0.18Weak
ovarian dysfunctionOpen Targets
0.10Suggestive
cervical cancerOpen Targets
0.07Suggestive
alcohol drinkingOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.05Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
atrial fibrillationOpen Targets
0.03Suggestive
osteitis deformansOpen Targets
0.02Suggestive
Kashin-Beck diseaseOpen Targets
0.02Suggestive
squamous cell carcinomaOpen Targets
0.02Suggestive
aortic diseaseOpen Targets
0.02Suggestive
response to xenobiotic stimulusOpen Targets
0.02Suggestive
brain cancerOpen Targets
0.02Suggestive
crystal arthropathyOpen Targets
0.02Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
poisoningOpen Targets
0.02Suggestive
smoking initiationOpen Targets
0.02Suggestive
Abruptio PlacentaeOpen Targets
0.02Suggestive
Townes-Brocks syndromeOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
INTS6Protein interaction100%INTS3Protein interaction100%INTS7Protein interaction98%INTS8Protein interaction95%INTS6LProtein interaction79%INTS1Protein interaction75%
Tissue Expression6 tissues
Heart
100%
Bone Marrow
99%
Liver
80%
Brain
73%
Lung
70%
Ovary
61%
Gene Interaction Network
Click a node to explore
INTS13INTS6INTS3INTS7INTS8INTS6LINTS1
PROTEIN STRUCTURE
Preparing viewer…
PDB8PK5 · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.46Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.32 [0.23–0.46]
RankingsWhere INTS13 stands among ~20K protein-coding genes
  • #6,993of 20,598
    Most Researched67
  • #2,587of 17,882
    Most Constrained (LOEUF)0.46 · top quartile
Genes detectedINTS13
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structural basis of Integrator-dependent RNA polymerase II termination.
PMID: 38570683
Nature · 2024
1.00
2
Targeted Enhancer Activation by a Subunit of the Integrator Complex.
PMID: 30008316
Mol Cell · 2018
0.90
3
Structural basis of the Integrator complex assembly and association with transcription factors.
PMID: 38823386
Mol Cell · 2024
0.80
4
Unveiling the ZNF384-INTS13-hnRNPC axis as a therapeutic vulnerability in cervical cancer.
PMID: 41429980
Cell Death Dis · 2025
0.70
5
INTS10-INTS13-INTS14 form a functional module of Integrator that binds nucleic acids and the cleavage module.
PMID: 32647223
Nat Commun · 2020
0.60