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GeneE
27 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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ITPA
inosine triphosphatase
Chromosome 20 Β· 20p13
NCBI Gene: 3704Ensembl: ENSG00000125877.14HGNC: HGNC:6176UniProt: A0A0S2Z3W7
170PubMed Papers
22Diseases
0Drugs
37Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleoplasmcytosolidentical protein bindingpurine nucleoside triphosphate catabolic processdevelopmental and epileptic encephalopathy, 35inosine triphosphatase deficiencygenetic developmental and epileptic encephalopathychronic hepatitis C virus infection
✦AI Summary

ITPA encodes inosine triphosphate pyrophosphohydrolase (ITPase), a protective enzyme that hydrolyzes non-canonical purine nucleotides including inosine triphosphate (ITP), deoxyinosine triphosphate (dITP), and xanthosine triphosphate (XTP) to their monophosphate derivatives 1. This pyrophosphatase activity serves as a cellular surveillance mechanism to exclude non-canonical purines from nucleotide pools, preventing their incorporation into RNA and DNA and avoiding chr20 lesions 1. ITPA deficiency is associated with severe disease manifestations. Complete ITPA deficiency causes early infantile epileptic encephalopathy characterized by progressive neurodegeneration, microcephaly, developmental delay, and seizures, with most patients dying before 4 years of age 2. Neuroimaging reveals T2-signal abnormalities and diffusion restriction in white matter tracts, particularly the posterior limb of internal capsule 2. ITPA polymorphisms affect approximately one-third of the human population and have significant clinical implications 3. The Pro32Thr variant (rs1127354) causes varying degrees of ITPA deficiency and influences drug responses 1. These polymorphisms increase risk of ribavirin-induced hemolytic anemia in hepatitis C patients 4 and thiopurine-related adverse effects including neutropenia 5, making ITPA genotyping valuable for personalized therapy decisions.

Sources cited
1
ITPA encodes inosine triphosphate pyrophosphohydrolase (ITPase), a protective enzyme that hydrolyzes non-canonical purine nucleotides including inosine triphosphate (ITP), deoxyinosine triphosphate (dITP), and xanthosine triphosphate (XTP) to their monophosphate derivatives .
PMID: 23969025
2
Complete ITPA deficiency causes early infantile epileptic encephalopathy characterized by progressive neurodegeneration, microcephaly, developmental delay, and seizures, with most patients dying before 4 years of age .
PMID: 35098521
3
ITPA polymorphisms affect approximately one-third of the human population and have significant clinical implications .
PMID: 27770805
4
These polymorphisms increase risk of ribavirin-induced hemolytic anemia in hepatitis C patients and thiopurine-related adverse effects including neutropenia , making ITPA genotyping valuable for personalized therapy decisions.
PMID: 26438033
5
These polymorphisms increase risk of ribavirin-induced hemolytic anemia in hepatitis C patients and thiopurine-related adverse effects including neutropenia , making ITPA genotyping valuable for personalized therapy decisions.
PMID: 35034963
Disease Associationsβ“˜22
developmental and epileptic encephalopathy, 35Open Targets
0.77Strong
inosine triphosphatase deficiencyOpen Targets
0.75Strong
genetic developmental and epileptic encephalopathyOpen Targets
0.65Moderate
chronic hepatitis C virus infectionOpen Targets
0.45Moderate
infantile epileptic-dyskinetic encephalopathyOpen Targets
0.41Moderate
developmental and epileptic encephalopathyOpen Targets
0.37Weak
anemia (phenotype)Open Targets
0.36Weak
response to ribavirinOpen Targets
0.36Weak
HypodontiaOpen Targets
0.34Weak
tooth agenesisOpen Targets
0.34Weak
genetic disorderOpen Targets
0.34Weak
neurodegenerative diseaseOpen Targets
0.30Weak
Sensorineural hearing impairmentOpen Targets
0.29Weak
Parkinson diseaseOpen Targets
0.20Weak
melanomaOpen Targets
0.17Weak
Abnormality of refractionOpen Targets
0.11Weak
risk-taking behaviourOpen Targets
0.11Weak
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.09Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
anemiaOpen Targets
0.07Suggestive
Developmental and epileptic encephalopathy 35UniProt
Inosine triphosphate pyrophosphohydrolase deficiencyUniProt
Pathogenic Variants37
NM_033453.4(ITPA):c.359_366dup (p.Gly123fs)Pathogenic
Developmental and epileptic encephalopathy, 35|Inosine triphosphatase deficiency|not provided|Hypodontia
β˜…β˜…β˜†β˜†2026β†’ Residue 123
NM_033453.4(ITPA):c.124+1G>APathogenic
Inosine triphosphatase deficiency|not provided|Developmental and epileptic encephalopathy, 35;Inosine triphosphatase deficiency
β˜…β˜…β˜†β˜†2025
NM_033453.4(ITPA):c.452G>A (p.Trp151Ter)Pathogenic
Developmental and epileptic encephalopathy, 35|not provided|Inosine triphosphatase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 151
NM_033453.4(ITPA):c.519del (p.Asn173fs)Pathogenic
Inosine triphosphatase deficiency|ITPA-related disorder|Developmental and epileptic encephalopathy, 35|Infantile epileptic dyskinetic encephalopathy
β˜…β˜…β˜†β˜†2025β†’ Residue 173
NM_033453.4(ITPA):c.124+2T>CPathogenic
Inosine triphosphatase deficiency|Developmental and epileptic encephalopathy, 35
β˜…β˜…β˜†β˜†2025
NM_033453.4(ITPA):c.411+1delPathogenic
Inosine triphosphatase deficiency|Inosine triphosphatase deficiency;Developmental and epileptic encephalopathy, 35|Developmental and epileptic encephalopathy, 35
β˜…β˜…β˜†β˜†2024
NM_033453.4(ITPA):c.264-1G>APathogenic
Inosine triphosphatase deficiency|Developmental and epileptic encephalopathy, 35|Ovarian serous cystadenocarcinoma
β˜…β˜…β˜†β˜†2023
NM_033453.4(ITPA):c.270G>A (p.Trp90Ter)Pathogenic
Inosine triphosphatase deficiency|Infantile epileptic dyskinetic encephalopathy
β˜…β˜…β˜†β˜†2023β†’ Residue 90
NM_033453.4(ITPA):c.403del (p.Arg135fs)Pathogenic
Inborn genetic diseases|Inosine triphosphatase deficiency
β˜…β˜…β˜†β˜†2022β†’ Residue 135
NM_033453.4(ITPA):c.370_371delinsT (p.Asp124fs)Likely pathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2025β†’ Residue 124
NM_033453.4(ITPA):c.189+1G>APathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2025
NM_033453.4(ITPA):c.264-2A>GPathogenic
Inosine triphosphatase deficiency
β˜…β˜†β˜†β˜†2025
NM_033453.4(ITPA):c.136C>T (p.Gln46Ter)Likely pathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2025β†’ Residue 46
NM_033453.4(ITPA):c.70dup (p.Val24fs)Pathogenic
Inosine triphosphatase deficiency
β˜…β˜†β˜†β˜†2024β†’ Residue 24
NM_033453.4(ITPA):c.14T>A (p.Leu5Ter)Likely pathogenic
Inosine triphosphatase deficiency;Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2024β†’ Residue 5
NM_033453.4(ITPA):c.489-1G>TLikely pathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2024
NM_033453.4(ITPA):c.264-1G>CPathogenic
Inosine triphosphatase deficiency
β˜…β˜†β˜†β˜†2024
NM_033453.4(ITPA):c.325G>T (p.Asp109Tyr)Likely pathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2023β†’ Residue 109
NM_033453.4(ITPA):c.41del (p.Thr14fs)Pathogenic
Developmental and epileptic encephalopathy, 35
β˜…β˜†β˜†β˜†2023β†’ Residue 14
NM_033453.4(ITPA):c.73C>T (p.Gln25Ter)Pathogenic
Inosine triphosphatase deficiency
β˜…β˜†β˜†β˜†2023β†’ Residue 25
View on ClinVar β†—
Related Genes
NME1Protein interaction99%ENTPD1Protein interaction97%ENTPD3Protein interaction97%NME2Protein interaction97%NT5C2Protein interaction97%NT5CProtein interaction97%
Tissue Expression6 tissues
Liver
100%
Lung
72%
Ovary
70%
Bone Marrow
60%
Heart
48%
Brain
40%
Gene Interaction Network
Click a node to explore
ITPANME1ENTPD1ENTPD3NME2NT5C2NT5C
PROTEIN STRUCTURE
Preparing viewer…
PDB2CAR Β· 1.09 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.16LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.85 [0.63–1.16]
RankingsWhere ITPA stands among ~20K protein-coding genes
  • #2,602of 20,598
    Most Researched170 Β· top quartile
  • #1,611of 5,498
    Most Pathogenic Variants37
  • #12,104of 17,882
    Most Constrained (LOEUF)1.16
Genes detectedITPA
Sources retrieved27 papers
Response timeβ€”
πŸ“„ Sources
27β–Ό
1
ESICM-ESPNIC international expert consensus on quantitative lung ultrasound in intensive care.
PMID: 40353867
Intensive Care Med Β· 2025
1.00
2
The Genetic Landscape of Epilepsy of Infancy with Migrating Focal Seizures.
PMID: 31618474
Ann Neurol Β· 2019
0.90
3
Association of ITPA gene polymorphisms with adverse effects of AZA/6-MP administration: a systematic review and meta-analysis.
PMID: 35034963
Pharmacogenomics J Β· 2022
0.80
4
Frequency of ITPA gene polymorphisms in Iranian patients with acute lymphoblastic leukemia and prediction of its myelosuppressive effects.
PMID: 26242828
Leuk Res Β· 2015
0.76
5
ITPA (inosine triphosphate pyrophosphatase): from surveillance of nucleotide pools to human disease and pharmacogenetics.
PMID: 23969025
Mutat Res Β· 2013
0.70