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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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KCNA6
potassium voltage-gated channel subfamily A member 6
Chromosome 12 Β· 12p13.32
NCBI Gene: 3742Ensembl: ENSG00000151079.8HGNC: HGNC:6225UniProt: P17658
19PubMed Papers
20Diseases
7Drugs
3Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
CLINICAL
FDA Approved Target
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
voltage-gated potassium channel activitypotassium ion transmembrane transportdelayed rectifier potassium channel activityprotein bindingmultiple sclerosisMyasthenia gravisLambert-Eaton myasthenic syndromeMuscle weakness
✦AI Summary

KCNA6 (Kv1.6) is a voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes by forming tetrameric, potassium-selective channels that open and close in response to membrane voltage changes 1. The channel can form both homotetrameric and heterotetrameric complexes with other Kv1 family members, with channel properties depending on subunit composition 2. Pathogenic de novo KCNA6 variants cause early infantile epileptic encephalopathy and neurodevelopmental disorders. Mutations in the S6 helix region show gain-of-function effects, specifically slowing channel deactivation and shifting voltage dependence hyperpolarically, resulting in excessive neuronal excitability 3. More recent findings confirm that loss-of-function KCNA6 mutations also contribute to early-onset developmental epileptic encephalopathy 4. In spinocerebellar ataxia type 3, reduced Kcna6 transcript levels correlate with Purkinje neuron hyperexcitability; restoring KCNA6 expression through antisense oligonucleotide therapy normalizes neuronal firing and motor function 5. Beyond neurological disease, KCNA6 has been identified as a host factor facilitating SARS-CoV-2 entry; viral infection decreased when endogenous KCNA6 was disrupted 6. KCNA6 methylation status has also been associated with cardiac amyloidosis risk in Val122Ile-TTR carriers and glyphosate exposure in environmental health studies 78.

Sources cited
1
KCNA6 forms tetrameric potassium-selective channels with voltage-dependent gating
PMID: 14575698
2
Voltage-gated potassium channels form tetramers with properties dependent on alpha subunit composition
PMID: 2347305
3
De novo KCNA6 variants cause early infantile epileptic encephalopathy through gain-of-function effects on channel deactivation
PMID: 36318112
4
Loss-of-function KCNA6 mutations contribute to early-onset developmental epileptic encephalopathy
PMID: 40472070
5
Reduced Kcna6 expression correlates with Purkinje neuron hyperexcitability in SCA3; restoring expression normalizes neuronal function
PMID: 32789747
6
KCNA6 is identified as a host factor facilitating SARS-CoV-2 entry; disruption decreases viral infection
PMID: 40674406
7
KCNA6 methylation is associated with cardiac amyloidosis in Val122Ile-TTR carriers
PMID: 33428857
8
KCNA6 promoter methylation is associated with glyphosate exposure
PMID: 35377194
Disease Associationsβ“˜20
multiple sclerosisOpen Targets
0.59Moderate
Myasthenia gravisOpen Targets
0.56Moderate
Lambert-Eaton myasthenic syndromeOpen Targets
0.55Moderate
Muscle weaknessOpen Targets
0.46Moderate
congenital myasthenic syndromeOpen Targets
0.43Moderate
Congenital myasthenic syndromesOpen Targets
0.43Moderate
cancerOpen Targets
0.37Weak
neoplasmOpen Targets
0.37Weak
nervous system diseaseOpen Targets
0.37Weak
autoimmune diseaseOpen Targets
0.37Weak
autoimmune disorder of the nervous systemOpen Targets
0.37Weak
cardiac arrhythmiaOpen Targets
0.37Weak
immune system diseaseOpen Targets
0.37Weak
Increased muscle fatiguabilityOpen Targets
0.37Weak
nervous system neoplasmOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.37Weak
neuromuscular diseaseOpen Targets
0.37Weak
neuromuscular junction diseaseOpen Targets
0.37Weak
paraneoplastic neurologic syndromeOpen Targets
0.37Weak
small cell carcinomaOpen Targets
0.37Weak
Pathogenic Variants3
NM_002235.5(KCNA6):c.1346C>T (p.Thr449Ile)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 449
NM_002235.5(KCNA6):c.1366G>C (p.Val456Leu)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 456
NM_002235.5(KCNA6):c.1367T>A (p.Val456Asp)Likely pathogenic
11 conditions
β˜…β˜†β˜†β˜†2023β†’ Residue 456
View on ClinVar β†—
Drug Targets7
AMIFAMPRIDINEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
AMIFAMPRIDINE PHOSPHATEApproved
Voltage-gated potassium channel blocker
Lambert-Eaton myasthenic syndrome
DALFAMPRIDINEApproved
Voltage-gated potassium channel blocker
multiple sclerosis
GUANIDINEPhase III
Voltage-gated potassium channel blocker
neuroendocrine neoplasm
GUANIDINE HYDROCHLORIDEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
NERISPIRDINEPhase II
Voltage-gated potassium channel blocker
multiple sclerosis
TEDISAMILApproved
Voltage-gated potassium channel blocker
cardiac arrhythmia
Related Genes
KCNV2Shared pathway100%KCNV1Shared pathway100%KCND1Shared pathway100%KCNA10Shared pathway100%KCNA7Shared pathway100%KCNAB2Protein interaction95%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
KCNA6KCNV2KCNV1KCND1KCNA10KCNA7KCNAB2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P17658
View on AlphaFold β†—
RankingsWhere KCNA6 stands among ~20K protein-coding genes
  • #14,447of 20,598
    Most Researched19
  • #337of 1,025
    FDA-Approved Drug Targets5
  • #4,153of 5,498
    Most Pathogenic Variants3
Genes detectedKCNA6
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
De novo missense variants of KCNA3, KCNA4, and KCNA6 cause early onset developmental epileptic encephalopathy.
PMID: 40472070
Hum Mol Genet Β· 2025
1.00
2
Membrane-wide screening identifies potential tissue-specific determinants of SARS-CoV-2 tropism.
PMID: 40674406
PLoS Pathog Β· 2025
0.90
3
De novo KCNA6 variants with attenuated K
PMID: 36318112
Epilepsia Β· 2023
0.80
4
Analysis of a human brain voltage-gated potassium channel gene, KCNA6 (HBK2), in patients with juvenile myoclonic epilepsy.
PMID: 8719753
Neuropediatrics Β· 1995
0.70
5
Generalized myokymia, or neuromyotonia, or both in dogs with or without spinocerebellar ataxia.
PMID: 37905444
J Vet Intern Med Β· 2023
0.60