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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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KCNMA1
potassium calcium-activated channel subfamily M alpha 1
Chromosome 10 · 10q22.3
NCBI Gene: 3778Ensembl: ENSG00000156113.25HGNC: HGNC:6284UniProt: A0A087WZL8
230PubMed Papers
24Diseases
3Drugs
48Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedIon ChannelTransporter
RESEARCH IMPACT
Trending
CLINICAL
Clinical TrialsOMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
actin bindingnegative regulation of cell volumeresponse to calcium ionmicturitionGeneralized epilepsy - paroxysmal dyskinesiageneralized epilepsy-paroxysmal dyskinesia syndromeLiang-Wang syndromecerebellar atrophy, developmental delay, and seizures
✦AI Summary

KCNMA1 encodes the pore-forming α subunit of the large conductance calcium and voltage-activated potassium (BK) channel 1. This channel mediates potassium export in response to both membrane depolarization and increased cytosolic calcium levels, playing critical roles in regulating neuronal excitability and muscle contractility 1. BK channels are widely distributed across tissues with highest expression in brain and muscle 1. KCNMA1 mutations cause a spectrum of neurological channelopathies collectively termed "KCNMA1-linked channelopathy" 1. These mutations can produce both gain-of-function (GOF) and loss-of-function (LOF) alterations in BK channel activity 1. Primary clinical manifestations include seizures, movement disorders, developmental delay, and intellectual disability 1. Notably, paroxysmal nonkinesigenic dyskinesia (PNKD3) predominantly segregates with GOF variants, while neurodevelopmental abnormalities and additional movement disorders are more common with LOF variants 2. Recent evidence indicates that specific KCNMA1 variants, such as D434G and N999S encoding GOF channels, cause seizure and PNKD3 3. Beyond neurological disease, KCNMA1 mutations have been newly identified as a rare genetic cause of neonatal diabetes mellitus 4. The variant-defined functional classification of KCNMA1 mutations enables precision therapeutic approaches tailored to GOF versus LOF alterations 3.

Sources cited
1
KCNMA1 encodes the BK channel α subunit, its tissue distribution, expression levels, and roles in neuronal excitability and muscle contractility; summary of 16 mutations in 37 patients with neurological phenotypes
PMID: 31427379
2
KCNMA1-linked channelopathy genotype-phenotype correlations showing movement disorders segregate by mutation type, with PNKD predominantly in GOF variants and neurodevelopmental abnormalities more common in LOF variants
PMID: 34224328
3
Novel KCNMA1 variants associated with dyskinesia and epilepsy syndrome; validation of D434G and N999S as GOF alleles causing seizure and PNKD3; variant-defined therapeutic approaches
PMID: 37906945
4
KCNMA1 identified as a newly discovered NDM gene causing neonatal diabetes mellitus
PMID: 39344692
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ24
Generalized epilepsy - paroxysmal dyskinesiaOpen Targets
0.83Strong
generalized epilepsy-paroxysmal dyskinesia syndromeOpen Targets
0.81Strong
Liang-Wang syndromeOpen Targets
0.74Strong
cerebellar atrophy, developmental delay, and seizuresOpen Targets
0.73Strong
generalised epilepsyOpen Targets
0.61Moderate
genetic disorderOpen Targets
0.50Moderate
myopiaOpen Targets
0.45Moderate
osteoarthritis, hipOpen Targets
0.40Weak
refractive errorOpen Targets
0.38Weak
obesityOpen Targets
0.33Weak
muscular diseaseOpen Targets
0.33Weak
injuryOpen Targets
0.33Weak
autism spectrum disorderOpen Targets
0.32Weak
COVID-19Open Targets
0.31Weak
alcohol drinkingOpen Targets
0.31Weak
diabetes mellitusOpen Targets
0.31Weak
severe acute respiratory syndromeOpen Targets
0.30Weak
HypermetropiaOpen Targets
0.30Weak
Progressive visual lossOpen Targets
0.30Weak
Abnormality of refractionOpen Targets
0.30Weak
Cerebellar atrophy, developmental delay, and seizuresUniProt
Epilepsy, idiopathic generalized 16UniProt
Liang-Wang syndromeUniProt
Paroxysmal non-kinesigenic dyskinesia 3 with or without generalized epilepsyUniProt
Pathogenic Variants48
NM_001161352.2(KCNMA1):c.3158A>G (p.Asn1053Ser)Pathogenic
not provided|Generalized epilepsy-paroxysmal dyskinesia syndrome
★★☆☆2025→ Residue 1053
NM_001161352.2(KCNMA1):c.1123G>A (p.Gly375Arg)Pathogenic
Inborn genetic diseases|Liang-Wang syndrome|not provided
★★☆☆2024→ Residue 375
NM_001161352.2(KCNMA1):c.2588C>T (p.Pro863Leu)Pathogenic
KCNMA1-related disorder|not provided|Liang-Wang syndrome|Intellectual disability
★★☆☆2023→ Residue 863
NM_001161352.2(KCNMA1):c.3022G>A (p.Asp1008Asn)Likely pathogenic
Intellectual disability|Liang-Wang syndrome|not provided
★★☆☆2023→ Residue 1008
NM_001161352.2(KCNMA1):c.70_73del (p.Leu23_Arg24insTer)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome|not provided
★★☆☆2023→ Residue 23
NM_001161352.2(KCNMA1):c.2092+1G>ALikely pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome|KCNMA1-related disorder
★☆☆☆2026
NM_001161352.2(KCNMA1):c.3342+1G>ALikely pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2025
NM_001161352.2(KCNMA1):c.1070A>G (p.Asp357Gly)Likely pathogenic
Inborn genetic diseases
★☆☆☆2025→ Residue 357
NM_001161352.2(KCNMA1):c.2026del (p.Tyr676fs)Likely pathogenic
Autosomal dominant KCNMA1-related disorders
★☆☆☆2025→ Residue 676
NM_001161352.2(KCNMA1):c.1372C>T (p.Arg458Ter)Pathogenic
Cerebellar atrophy, developmental delay, and seizures|not provided
★☆☆☆2025→ Residue 458
NM_001161352.2(KCNMA1):c.1123G>T (p.Gly375Trp)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2025→ Residue 375
NM_001161352.2(KCNMA1):c.697-1G>ALikely pathogenic
not provided
★☆☆☆2025
NM_001161352.2(KCNMA1):c.297del (p.Phe99fs)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2025→ Residue 99
NM_001161352.2(KCNMA1):c.2488C>T (p.Arg830Ter)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2024→ Residue 830
NM_001161352.2(KCNMA1):c.1051T>A (p.Ser351Thr)Pathogenic
not provided
★☆☆☆2024→ Residue 351
NM_001161352.2(KCNMA1):c.1619G>A (p.Trp540Ter)Likely pathogenic
not provided
★☆☆☆2024→ Residue 540
NM_001161352.2(KCNMA1):c.1703T>C (p.Leu568Pro)Likely pathogenic
Liang-Wang syndrome
★☆☆☆2024→ Residue 568
NM_001161352.2(KCNMA1):c.3226del (p.Ile1076fs)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2024→ Residue 1076
NM_001161352.2(KCNMA1):c.1869del (p.Phe623fs)Pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2023→ Residue 623
NM_001161352.2(KCNMA1):c.3016+2T>CLikely pathogenic
Generalized epilepsy-paroxysmal dyskinesia syndrome
★☆☆☆2023
View on ClinVar ↗
Drug Targets3
ANDOLASTPhase III
Calcium-activated potassium channel subunit alpha-1 activator
rhinitis
BMS-223131Phase II
Calcium-activated potassium channel subunit alpha-1 activator
erectile dysfunction
FLINDOKALNERPhase III
Voltage-gated potassium channel KCNQ3/KCNQ4 activator
nervous system injury
Related Genes
KCNMB4Protein interaction100%KCNN3Protein interaction98%KCNN4Protein interaction98%KCNN2Protein interaction96%KCNMB1Protein interaction95%LRRC26Protein interaction95%
Tissue Expression6 tissues
Brain
100%
Liver
24%
Ovary
21%
Lung
13%
Heart
9%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
KCNMA1KCNMB4KCNN3KCNN4KCNN2KCNMB1LRRC26
PROTEIN STRUCTURE
Preparing viewer…
PDB6V5A · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.33Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.24 [0.17–0.33]
RankingsWhere KCNMA1 stands among ~20K protein-coding genes
  • #1,752of 20,598
    Most Researched230 · top 10%
  • #1,366of 5,498
    Most Pathogenic Variants48 · top quartile
  • #1,391of 17,882
    Most Constrained (LOEUF)0.33 · top 10%
Genes detectedKCNMA1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Potassium channels and epilepsy.
PMID: 36225112
Acta Neurol Scand · 2022
1.00
2
PMID: 31427379
J Gen Physiol · 2019
0.90
3
Neonatal diabetes mellitus around the world: Update 2024.
PMID: 39344692
J Diabetes Investig · 2024
0.80
4
Role of KCNMA1 gene in breast cancer invasion and metastasis to brain.
PMID: 19640305
BMC Cancer · 2009
0.72
5
BK Channelopathies and
PMID: 37906945
Annu Rev Physiol · 2024
0.70