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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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KCNN2
potassium calcium-activated channel subfamily N member 2
Chromosome 5 Β· 5q22.3
NCBI Gene: 3781Ensembl: ENSG00000080709.17HGNC: HGNC:6291UniProt: A0A3F2YNY5
47PubMed Papers
22Diseases
0Drugs
19Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
inward rectifier potassium channel activityprotein bindingsmall conductance calcium-activated potassium channel activityprotein domain specific bindingneurodevelopmental disorder with or without variable movement or behavioral abnormalitiesIntellectual disabilitySeizureatrial fibrillation
✦AI Summary

KCNN2 encodes the small-conductance calcium-activated potassium channel 2 (SK2), a voltage-independent potassium channel that mediates calcium-dependent potassium ion transmembrane transport 1. The channel constitutively binds calmodulin, which upon calcium binding triggers a conformational change enabling channel opening with a characteristic single-channel conductance of ~3 picosiemens 12. SK2 displays inward rectification that reduces outward potassium conductance at positive membrane potentials, controlled by positively charged residues in the S6 transmembrane domain 1. Structurally, extracellular S3-S4 loops form a Ξ²-hairpin canopy with an aromatic center over the pore, with inter-subunit hydrogen bonds tethering the selectivity filter 3. SK2 plays critical roles in cardiac and neuronal physiology. It mediates repolarization during atrial cardiac action potentials 4, and KCNN2 genetic variants associate with ventricular tachyarrhythmias and sudden cardiac death risk 5. N2O-induced SK2 channel inhibition activates layer 5 prefrontal neurons, contributing to antidepressant effects 6. Clinically, heterozygous KCNN2 variants cause autosomal-dominant neurodevelopmental movement disorders including developmental delay, cerebellar ataxia, and extrapyramidal symptoms, likely through haploinsufficiency 27. Large-scale exome sequencing identified KCNN2 variants in dystonia patients, supporting its role in movement disorder pathogenesis 8. Additionally, SK2 regulates migration and chemosensitivity in ovarian cancer cells 9.

Sources cited
1
KCNN2 encodes the small-conductance calcium-activated potassium channel 2 (SK2), a voltage-independent potassium channel that mediates calcium-dependent potassium ion transmembrane transport .
PMID: 10991935
2
Structurally, extracellular S3-S4 loops form a Ξ²-hairpin canopy with an aromatic center over the pore, with inter-subunit hydrogen bonds tethering the selectivity filter .
PMID: 40246884
3
It mediates repolarization during atrial cardiac action potentials , and KCNN2 genetic variants associate with ventricular tachyarrhythmias and sudden cardiac death risk .
PMID: 13679367
4
It mediates repolarization during atrial cardiac action potentials , and KCNN2 genetic variants associate with ventricular tachyarrhythmias and sudden cardiac death risk .
PMID: 27442679
5
N2O-induced SK2 channel inhibition activates layer 5 prefrontal neurons, contributing to antidepressant effects .
PMID: 40180931
6
Large-scale exome sequencing identified KCNN2 variants in dystonia patients, supporting its role in movement disorder pathogenesis .
PMID: 40533913
7
Additionally, SK2 regulates migration and chemosensitivity in ovarian cancer cells .
PMID: 38480668
Disease Associationsβ“˜22
neurodevelopmental disorder with or without variable movement or behavioral abnormalitiesOpen Targets
0.67Moderate
Intellectual disabilityOpen Targets
0.57Moderate
SeizureOpen Targets
0.56Moderate
atrial fibrillationOpen Targets
0.53Moderate
myoclonus-dystonia syndromeOpen Targets
0.53Moderate
Global developmental delayOpen Targets
0.52Moderate
Autistic behaviorOpen Targets
0.50Moderate
genetic disorderOpen Targets
0.47Moderate
movement disorderOpen Targets
0.46Moderate
Mild intellectual disabilityOpen Targets
0.46Moderate
cerebellar ataxiaOpen Targets
0.46Moderate
Motor ticsOpen Targets
0.45Moderate
hypertensionOpen Targets
0.42Moderate
Moderate intellectual disabilityOpen Targets
0.41Moderate
atrial flutterOpen Targets
0.40Moderate
mathematical abilityOpen Targets
0.38Weak
BradykinesiaOpen Targets
0.34Weak
DyskinesiaOpen Targets
0.34Weak
Severe intellectual disabilityOpen Targets
0.34Weak
cardioembolic strokeOpen Targets
0.32Weak
Dystonia 34, myoclonicUniProt
Neurodevelopmental disorder with or without variable movement or behavioral abnormalitiesUniProt
Pathogenic Variants19
NM_021614.4(KCNN2):c.1720G>A (p.Gly574Ser)Pathogenic
Global developmental delay;Mild intellectual disability;Autistic behavior;Seizure|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 574
NM_021614.4(KCNN2):c.1598_1600del (p.Leu533del)Pathogenic
Inborn genetic diseases|Global developmental delay|KCNN2-related disorder|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜…β˜†β˜†2025β†’ Residue 533
NM_021614.4(KCNN2):c.1718A>G (p.Tyr573Cys)Likely pathogenic
Cerebellar ataxia;Intellectual disability;Autistic behavior;Global developmental delay|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜…β˜†β˜†2023β†’ Residue 573
NM_021614.4(KCNN2):c.1890+2T>CLikely pathogenic
Moderate intellectual disability;Seizure;Autistic behavior;Global developmental delay|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜…β˜†β˜†2020
NM_021614.4(KCNN2):c.1267dup (p.Tyr423fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 423
NM_021614.4(KCNN2):c.1993C>T (p.Arg665Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 665
NM_021614.4(KCNN2):c.1698_1700dup (p.Thr567_Phe568insThr)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 567
NM_021614.4(KCNN2):c.1685G>T (p.Trp562Leu)Likely pathogenic
Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2024β†’ Residue 562
NM_021614.4(KCNN2):c.548C>A (p.Ser183Ter)Likely pathogenic
Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2023β†’ Residue 183
NM_021614.4(KCNN2):c.1960_1961dup (p.Ile655fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 655
NM_021614.4(KCNN2):c.1384dup (p.Thr462fs)Pathogenic
Neurodevelopmental disorder with or without variable movement or behavioral abnormalities;Dystonia 34, myoclonic
β˜…β˜†β˜†β˜†2023β†’ Residue 462
NM_021614.4(KCNN2):c.1977dup (p.Val660fs)Likely pathogenic
Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2023β†’ Residue 660
NM_021614.4(KCNN2):c.1771G>C (p.Gly591Arg)Likely pathogenic
Neurodevelopmental disorder
β˜…β˜†β˜†β˜†2022β†’ Residue 591
NM_021614.4(KCNN2):c.1498_1499delinsTC (p.Ile500Ser)Likely pathogenic
Motor tics;Autistic behavior;Global developmental delay;Intellectual disability|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2020β†’ Residue 500
NM_021614.4(KCNN2):c.1116C>A (p.Tyr372Ter)Pathogenic
Motor tics;Severe intellectual disability;Autistic behavior;Global developmental delay|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2020β†’ Residue 372
NM_021614.4(KCNN2):c.1436_1439del (p.Leu478_Tyr479insTer)Pathogenic
Global developmental delay;Cerebellar ataxia;Mild intellectual disability
β˜…β˜†β˜†β˜†2020β†’ Residue 478
NM_021614.4(KCNN2):c.1798C>G (p.Leu600Val)Pathogenic
Moderate intellectual disability;Autistic behavior;Global developmental delay
β˜…β˜†β˜†β˜†2020β†’ Residue 600
NM_021614.4(KCNN2):c.1931T>C (p.Leu644Pro)Pathogenic
Global developmental delay;Cerebellar ataxia;Mild intellectual disability;Dyskinesia|Neurodevelopmental disorder with or without variable movement or behavioral abnormalities
β˜…β˜†β˜†β˜†2020β†’ Residue 644
NM_021614.4(KCNN2):c.1780-2A>GLikely pathogenic
Dystonia 34, myoclonic
β˜†β˜†β˜†β˜†2026
View on ClinVar β†—
Related Genes
KCNU1Protein interaction98%PRKCAProtein interaction98%CALM1Protein interaction98%KCNN4Protein interaction98%KCNMA1Protein interaction96%KCNMB1Protein interaction96%
Tissue Expression6 tissues
Liver
100%
Heart
73%
Brain
37%
Lung
11%
Ovary
6%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
KCNN2KCNU1PRKCACALM1KCNN4KCNMA1KCNMB1
PROTEIN STRUCTURE
Preparing viewer…
PDB5V02 Β· 1.78 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.66LoF Tolerant
pLIβ“˜
0.07Tolerant
Observed/Expected LoF0.45 [0.31–0.66]
RankingsWhere KCNN2 stands among ~20K protein-coding genes
  • #9,223of 20,598
    Most Researched47
  • #2,248of 5,498
    Most Pathogenic Variants19
  • #4,842of 17,882
    Most Constrained (LOEUF)0.66
Genes detectedKCNN2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Cryo-EM structures of the small-conductance Ca
PMID: 40246884
Nat Commun Β· 2025
1.00
2
KCNN2 polymorphisms and cardiac tachyarrhythmias.
PMID: 27442679
Medicine (Baltimore) Β· 2016
0.90
3
[Construction and identification of the expression plasmid of SK2 (KCNN2) gene from human atrial myocytes with overlapping PCR].
PMID: 23156743
Zhongguo Ying Yong Sheng Li Xue Za Zhi Β· 2012
0.80
4
Variants in the SK2 channel gene (KCNN2) lead to dominant neurodevelopmental movement disorders.
PMID: 33242881
Brain Β· 2020
0.70
5
Genetic Diversity and Expanded Phenotypes in Dystonia: Insights From Large-Scale Exome Sequencing.
PMID: 40533913
Ann Clin Transl Neurol Β· 2025
0.60