HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KLHL13
kelch like family member 13
Chromosome X · Xq24
NCBI Gene: 90293Ensembl: ENSG00000003096.14HGNC: HGNC:22931UniProt: A0A0C4DG80
51PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
ubiquitin-protein transferase activityprotein bindingprotein ubiquitinationregulation of cytokinesisneurodegenerative diseasebreast carcinomainfectionclear cell renal carcinoma
✦AI Summary

KLHL13 (kelch like family member 13) functions as a substrate-specific adapter in the BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex, playing critical roles in cellular processes including mitosis, autophagy regulation, and pathogen responses. KLHL13 forms a functional E3 ubiquitin ligase complex with KLHL9 and CUL3 that mediates K63-linked ubiquitination of multiple substrates 12. This complex targets IRS1 for proteasomal degradation, where ATG16L1 deficiency leads to elevated KLHL9/KLHL13 expression and subsequent insulin resistance through IRS1 loss 3. In mitochondrial quality control, the KLHL9-KLHL13-CUL3 complex ubiquitinates IMMT at K211, initiating mitophagy to reduce mitochondrial ROS production 12. Pathogenic bacteria exploit this pathway, with Burkholderia pseudomallei's BipD protein hijacking the KLHL9-KLHL13-CUL3 complex to promote mitophagy for bacterial survival 12. KLHL13 also interacts with UBE2D3 to mediate K63-linked ubiquitination of TAP2, impairing antigen presentation and enabling cancer immune evasion 4. Clinically, KLHL13 shows altered expression in various diseases including AML, where RHOBTB2 stabilizes KLHL13 protein levels 5, and serves as a potential biomarker in idiopathic pulmonary fibrosis and osteosarcoma 67.

Sources cited
1
KLHL13 forms E3 ubiquitin ligase complex with KLHL9 and CUL3 that ubiquitinates IMMT for mitophagy initiation
PMID: 38834545
2
BipD protein hijacks KLHL9-KLHL13-CUL3 complex for bacterial survival through mitophagy manipulation
PMID: 39265641
3
KLHL9/KLHL13/CUL3 complex targets IRS1 for degradation, linking autophagy deficiency to insulin resistance
PMID: 31515271
4
KLHL13 interacts with UBE2D3 to ubiquitinate TAP2 and impair antigen presentation in cancer
PMID: 41315272
5
RHOBTB2 stabilizes KLHL13 protein levels in acute myeloid leukemia
PMID: 41107424
6
KLHL13 identified as potential biomarker in idiopathic pulmonary fibrosis
PMID: 39067403
7
KLHL13 upregulated in osteosarcoma clinical samples and identified as potential therapeutic target
PMID: 36513192
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
breast carcinomaOpen Targets
0.04Suggestive
infectionOpen Targets
0.02Suggestive
clear cell renal carcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
Neurodevelopmental delayOpen Targets
0.01Suggestive
asthmaOpen Targets
0.01Suggestive
non-small cell lung carcinomaOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
diabetes mellitusOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
Neurodevelopmental disorderOpen Targets
0.01Suggestive
Parkinson diseaseOpen Targets
0.01Suggestive
Intellectual disabilityOpen Targets
0.01Suggestive
MacrocephalyOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
myxosarcomaOpen Targets
0.01Suggestive
pancreatic carcinomaOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
invasive breast ductal carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RHOBTB1Protein interaction100%RHOBTB2Protein interaction100%RBX1Protein interaction99%KLHL21Protein interaction94%AURKBProtein interaction93%KCTD13Protein interaction92%
Tissue Expression6 tissues
Heart
100%
Brain
41%
Ovary
39%
Bone Marrow
16%
Liver
11%
Lung
5%
Gene Interaction Network
Click a node to explore
KLHL13RHOBTB1RHOBTB2RBX1KLHL21AURKBKCTD13
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q96HC9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.46Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.27 [0.17–0.46]
RankingsWhere KLHL13 stands among ~20K protein-coding genes
  • #8,693of 20,598
    Most Researched51
  • #2,573of 17,882
    Most Constrained (LOEUF)0.46 · top quartile
Genes detectedKLHL13
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Burkholderia pseudomallei BipD modulates host mitophagy to evade killing.
PMID: 38834545
Nat Commun · 2024
1.00
2
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors.
PMID: 35685361
Comput Struct Biotechnol J · 2022
0.90
3
PMID: 39265641
Autophagy · 2024
0.80
4
RHOBTB2 enhances cell proliferation of acute myeloid leukemia by modulating Hippo-YAP1 signaling and dependent of KLHL13.
PMID: 41107424
Sci Rep · 2025
0.70
5
Deficiency of the autophagy gene ATG16L1 induces insulin resistance through KLHL9/KLHL13/CUL3-mediated IRS1 degradation.
PMID: 31515271
J Biol Chem · 2019
0.60