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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KRT13
keratin 13
Chromosome 17 Β· 17q21.2
NCBI Gene: 3860Ensembl: ENSG00000171401.16HGNC: HGNC:6415UniProt: A1A4E9
105PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeprotein bindingcytoskeleton organizationkeratin filamentWhite sponge nevusgenetic disorderwhite sponge nevus 1oral squamous cell carcinoma
✦AI Summary

KRT13 is a type 1 intermediate filament protein located on chromosome 17-q21.2 1 that maintains epithelial homeostasis and tissue organization. In healthy airways, KRT13 is associated with dividing cells resembling "hillock" cells and squamous differentiation 2. During viral infection, KRT13+ nasal epithelial cells interact with tissue-resident memory T cells via the CXCL16-CXCR6 axis 3. In normal esophageal epithelium, SOX2 promotes KRT13 expression as part of squamous differentiation programs 4. However, KRT13 exhibits oncogenic functions in multiple cancers. In lung squamous cell carcinoma, KLF4 induces a KRT13+ hillock-like tumor state characterized by slower proliferation and immunomodulatory signatures 5. In breast cancer, KRT13 directly binds plakoglobin to promote c-Myc signaling, driving stemness, epithelial-mesenchymal transition, and metastasis 6. KRT13 upregulation correlates with poor prognosis and is associated with radioresistance in pancreatic cancer stem-like cells 7. KRT13 expression also serves as a diagnostic marker to differentiate lung squamous cell carcinoma from metastatic oral squamous cell carcinoma 8. These findings indicate KRT13 has dual roles: supporting normal epithelial differentiation while promoting cancer stem cell properties and metastatic potential in multiple carcinomas.

Sources cited
1
KRT13 gene chromosomal location at 17q12-q21.2
PMID: 1385306
2
KRT13 association with dividing hillock cells and squamous cells in healthy airways
PMID: 32726565
3
KRT13+ epithelial cells interact with tissue-resident memory T cells via CXCL16-CXCR6 axis during viral infection
PMID: 38964332
4
SOX2 promotes KRT13 expression in squamous epithelial differentiation
PMID: 40587339
5
KLF4 induces KRT13+ hillock-like state in lung squamous cell carcinoma
PMID: 40161723
6
KRT13 promotes breast cancer stemness and metastasis via plakoglobin/c-Myc signaling pathway
PMID: 35078507
7
KRT13 upregulation associated with radioresistance in pancreatic cancer stem-like cells
PMID: 36610719
8
KRT13 expression distinguishes lung squamous cell carcinoma from oral squamous cell carcinoma metastases
PMID: 38114532
Disease Associationsβ“˜21
White sponge nevusOpen Targets
0.59Moderate
genetic disorderOpen Targets
0.19Weak
white sponge nevus 1Open Targets
0.13Weak
oral squamous cell carcinomaOpen Targets
0.10Weak
neoplasmOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.09Suggestive
infectionOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
esophageal squamous cell carcinomaOpen Targets
0.06Suggestive
rheumatoid arthritisOpen Targets
0.05Suggestive
laryngeal squamous cell carcinomaOpen Targets
0.05Suggestive
cleft palate with or without ankyloglossia, X-linkedOpen Targets
0.05Suggestive
Ophthalmoplegia - intellectual disability - lingua scrotalisOpen Targets
0.05Suggestive
ophthalmoplegia-intellectual disability-lingua scrotalis syndromeOpen Targets
0.05Suggestive
esophageal cancerOpen Targets
0.04Suggestive
Barrett's esophagusOpen Targets
0.04Suggestive
esophageal adenocarcinomaOpen Targets
0.04Suggestive
Melkersson-Rosenthal syndromeOpen Targets
0.04Suggestive
nasopharyngeal carcinomaOpen Targets
0.04Suggestive
White sponge nevus 2UniProt
Pathogenic Variants2
NM_153490.3(KRT13):c.332T>C (p.Leu111Pro)Pathogenic
not provided|White sponge nevus 2
β˜†β˜†β˜†β˜†2003β†’ Residue 111
NM_153490.3(KRT13):c.356T>C (p.Leu119Pro)Pathogenic
White sponge nevus 2|not provided
β˜†β˜†β˜†β˜†1995β†’ Residue 119
View on ClinVar β†—
Related Genes
KRT6AProtein interaction90%KRT4Protein interaction80%SPRR3Protein interaction76%LOC100653049Shared pathway75%KRT39Shared pathway75%KRT26Shared pathway75%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
77%
Ovary
48%
Lung
40%
Brain
0%
Heart
0%
Gene Interaction Network
Click a node to explore
KRT13KRT6AKRT4SPRR3LOC100653049KRT39KRT26
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P13646
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.91LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.66 [0.48–0.91]
RankingsWhere KRT13 stands among ~20K protein-coding genes
  • #4,535of 20,598
    Most Researched105 Β· top quartile
  • #4,310of 5,498
    Most Pathogenic Variants2
  • #8,201of 17,882
    Most Constrained (LOEUF)0.91
Genes detectedKRT13
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A Single-Cell Atlas of the Human Healthy Airways.
PMID: 32726565
Am J Respir Crit Care Med Β· 2020
1.00
2
Primary nasal influenza infection rewires tissue-scale memory response dynamics.
PMID: 38964332
Immunity Β· 2024
0.90
3
KLF4 promotes a KRT13+ hillock-like state in squamous lung cancer.
PMID: 40161723
bioRxiv Β· 2025
0.80
4
Chromosomal mapping of human cytokeratin 13 gene (KRT13).
PMID: 1385306
Genomics Β· 1992
0.70
5
KRT13 promotes stemness and drives metastasis in breast cancer through a plakoglobin/c-Myc signaling pathway.
PMID: 35078507
Breast Cancer Res Β· 2022
0.60