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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LHPP
phospholysine phosphohistidine inorganic pyrophosphate phosphatase
Chromosome 10 · 10q26.13
NCBI Gene: 64077Ensembl: ENSG00000107902.14HGNC: HGNC:30042UniProt: Q5T1Z0
44PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusnuclear speckprotein bindingprotein homodimerization activityopen-angle glaucomaAbnormality of the skeletal systemB-cell acute lymphoblastic leukemiaspina bifida
✦AI Summary

LHPP (phospholysine phosphohistidine inorganic pyrophosphate phosphatase) is a phosphatase with broad substrate specificity that hydrolyzes phosphohistidine, phospholysine, and inorganic pyrophosphate 1. Operating primarily in the cytosol and nucleus, LHPP functions as a tumor suppressor by dephosphorylating signaling proteins including CaMKIIα, ERK, AKT, and TYK2, thereby regulating multiple cellular pathways 234. In cancer contexts, low LHPP expression correlates with poor prognosis across gastric, prostate, and nasopharyngeal cancers 534. LHPP suppresses tumor stemness and chemotherapy resistance in gastric cancer by inhibiting GSK-3β phosphorylation and promoting antitumor immune infiltration 5. In prostate cancer, LHPP activates ferroptosis by preventing AKT-SKP2-mediated ACSL4 degradation 3. Genetically, LHPP variants (rs35936514) associate with major depressive disorder, modulating brain regional activity in the prefrontal cortex and temporal regions 67. In depression pathophysiology, LHPP upregulation in ventral hippocampal glutamatergic neurons promotes depression-like behavior via CaMKIIα and ERK dephosphorylation, reducing BDNF and dendritic spine density 2. LHPP represents a promising therapeutic target, with HDAC inhibitors potentially enhancing LHPP stability in cancer treatment 34.

Sources cited
1
LHPP is a phosphohistidine phosphatase with broad substrate specificity
PMID: 39063217
2
LHPP dephosphorylates CaMKIIα and ERK in hippocampal neurons and mediates depression-like behavior
PMID: 37678540
3
LHPP suppresses AKT phosphorylation and promotes ferroptosis in prostate cancer via ACSL4 accumulation
PMID: 39261475
4
LHPP inhibits TYK2-STAT1 signaling and tumor proliferation; HDAC4 regulates LHPP stability in nasopharyngeal carcinoma
PMID: 37023940
5
High LHPP expression suppresses stemness and chemotherapy resistance in gastric cancer through GSK-3β regulation
PMID: 40240758
6
LHPP rs35936514 polymorphism moderates brain regional activity in major depressive disorder
PMID: 27843651
7
LHPP gene variants contribute to genetic risk for major depressive disorder on chromosome 10
PMID: 26176920
8
LHPP is expressed at low levels in tumors and functions as a tumor suppressor inhibiting proliferation and metastasis
PMID: 35239447
Disease Associationsⓘ20
open-angle glaucomaOpen Targets
0.46Moderate
Abnormality of the skeletal systemOpen Targets
0.38Weak
B-cell acute lymphoblastic leukemiaOpen Targets
0.35Weak
spina bifidaOpen Targets
0.34Weak
cervical carcinomaOpen Targets
0.32Weak
liver diseaseOpen Targets
0.31Weak
osteoarthritis, hipOpen Targets
0.30Weak
oropharynx cancerOpen Targets
0.26Weak
total hip arthroplastyOpen Targets
0.25Weak
osteoarthritis, kneeOpen Targets
0.24Weak
total joint arthroplastyOpen Targets
0.24Weak
AnisometropiaOpen Targets
0.23Weak
diabetes mellitusOpen Targets
0.23Weak
corneal ulcerOpen Targets
0.22Weak
CholecystitisOpen Targets
0.22Weak
brain astrocytomaOpen Targets
0.21Weak
chondromalaciaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
gastric cancerOpen Targets
0.10Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ACYP1Shared pathway100%ACYP2Shared pathway100%ATP5PDProtein interaction100%ATP5PFProtein interaction100%ATP5MEProtein interaction100%ATP5MFProtein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
90%
Bone Marrow
46%
Heart
22%
Ovary
16%
Lung
13%
Gene Interaction Network
Click a node to explore
LHPPACYP1ACYP2ATP5PDATP5PFATP5MEATP5MF
PROTEIN STRUCTURE
Preparing viewer…
PDB2X4D · 1.92 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.26LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.90 [0.65–1.26]
RankingsWhere LHPP stands among ~20K protein-coding genes
  • #9,611of 20,598
    Most Researched44
  • #13,317of 17,882
    Most Constrained (LOEUF)1.26
Genes detectedLHPP
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Targeting LHPP in neoadjuvant chemotherapy resistance of gastric cancer: insights from single-cell and multi-omics data on tumor immune microenvironment and stemness characteristics.
PMID: 40240758
Cell Death Dis · 2025
1.00
2
The histidine phosphatase LHPP: an emerging player in cancer.
PMID: 35239447
Cell Cycle · 2022
0.90
3
Relationship between the LHPP Gene Polymorphism and Resting-State Brain Activity in Major Depressive Disorder.
PMID: 27843651
Neural Plast · 2016
0.80
4
Phosphatase LHPP confers prostate cancer ferroptosis activation by modulating the AKT-SKP2-ACSL4 pathway.
PMID: 39261475
Cell Death Dis · 2024
0.70
5
Histidine Phosphorylation: Protein Kinases and Phosphatases.
PMID: 39063217
Int J Mol Sci · 2024
0.60