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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PPA2
inorganic pyrophosphatase 2
Chromosome 4 Β· 4q24
NCBI Gene: 27068Ensembl: ENSG00000138777.21HGNC: HGNC:28883UniProt: Q9H2U2
85PubMed Papers
22Diseases
0Drugs
18Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrioninorganic diphosphate phosphatase activityregulation of mitochondrial membrane potentialdiphosphate metabolic processsudden cardiac arrestneurodegenerative diseasegenetic disorderAbnormality of the cardiovascular system
✦AI Summary

PPA2 (inorganic pyrophosphatase 2) encodes a mitochondrial matrix enzyme that hydrolyzes inorganic pyrophosphate, playing critical roles in mitochondrial function and cellular homeostasis 1. The enzyme is essential for maintaining mitochondrial membrane potential and proper mitochondrial organization 1. PPA2 regulates mitochondrial dynamics by activating fission signaling through interaction with MTFP1 and DNM1L, promoting both mitochondrial proliferation under physiological conditions and mitophagy during stress 2. The protein also functions as a tumor suppressor in colorectal cancer by promoting HIF-1Ξ± degradation through activation of the E3 ligase NEDD4 via dephosphorylation 3. Biallelic pathogenic variants in PPA2 cause severe cardiac phenotypes, including sudden cardiac death in infants and children, often triggered by alcohol intake, fever, or viral infections 45. The clinical spectrum ranges from sudden cardiac arrest to progressive heart failure, with high mortality rates - only 6 of 34 reported individuals survived, with deaths occurring primarily before age 2 or in teenagers 4. PPA2 dysfunction represents a rare but important cause of childhood cardiomyopathy, requiring strict alcohol avoidance and careful monitoring for fever-induced arrhythmias 65.

Sources cited
1
PPA2 encodes a mitochondrial matrix enzyme that hydrolyzes inorganic pyrophosphate and is essential for mitochondrial membrane potential and organization
PMID: 16300924
2
PPA2 regulates mitochondrial dynamics by activating fission signaling through MTFP1-DNM1L interaction, promoting mitochondrial proliferation and mitophagy
PMID: 40873007
3
PPA2 functions as a tumor suppressor by promoting HIF-1Ξ± degradation through NEDD4 activation via dephosphorylation
PMID: 40164945
4
Biallelic PPA2 variants cause sudden cardiac death in children, often triggered by alcohol or fever, with high mortality rates
PMID: 34400813
5
PPA2-related cardiac arrest requires prevention strategies including alcohol avoidance and fever monitoring
PMID: 39882621
6
PPA2 dysfunction is identified as a cause of severe childhood cardiomyopathy
PMID: 30384889
Disease Associationsβ“˜22
sudden cardiac arrestOpen Targets
0.80Strong
neurodegenerative diseaseOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.51Moderate
Abnormality of the cardiovascular systemOpen Targets
0.41Moderate
smoking initiationOpen Targets
0.40Moderate
dilated cardiomyopathyOpen Targets
0.37Weak
secondary malignant neoplasmOpen Targets
0.32Weak
enthesopathyOpen Targets
0.26Weak
irritable bowel syndromeOpen Targets
0.25Weak
multiple sclerosisOpen Targets
0.24Weak
Alzheimer diseaseOpen Targets
0.22Weak
skin cancerOpen Targets
0.22Weak
lysosomal storage diseaseOpen Targets
0.22Weak
Parkinson diseaseOpen Targets
0.22Weak
chronic obstructive pulmonary diseaseOpen Targets
0.22Weak
asthmaOpen Targets
0.21Weak
oral cavity carcinomaOpen Targets
0.15Weak
cardiac arrhythmiaOpen Targets
0.12Weak
cutaneous melanomaOpen Targets
0.12Weak
intelligenceOpen Targets
0.11Weak
Sudden cardiac failure, alcohol-inducedUniProt
Sudden cardiac failure, infantileUniProt
Pathogenic Variants18
NM_176869.3(PPA2):c.380G>T (p.Arg127Leu)Pathogenic
Sudden cardiac failure, infantile|not provided|Inborn genetic diseases|Sudden cardiac failure, infantile;Sudden cardiac failure, alcohol-induced
β˜…β˜…β˜†β˜†2026β†’ Residue 127
NM_176869.3(PPA2):c.514G>A (p.Glu172Lys)Pathogenic
Sudden cardiac failure, infantile|Sudden cardiac failure, alcohol-induced|not provided|Inborn genetic diseases|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2026β†’ Residue 172
NM_176869.3(PPA2):c.683C>T (p.Pro228Leu)Pathogenic
Sudden cardiac failure, alcohol-induced|not provided|Sudden cardiac failure, infantile|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 228
NM_176869.3(PPA2):c.476C>T (p.Thr159Met)Pathogenic
not provided|Sudden cardiac failure, infantile|Sudden cardiac failure, alcohol-induced
β˜…β˜…β˜†β˜†2025β†’ Residue 159
NM_176869.3(PPA2):c.604T>C (p.Trp202Arg)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 202
NM_176869.3(PPA2):c.556G>A (p.Val186Met)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 186
NM_176869.3(PPA2):c.524C>G (p.Ser175Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 175
NM_176869.3(PPA2):c.611T>A (p.Leu204Ter)Likely pathogenic
Cardiovascular phenotype
β˜…β˜†β˜†β˜†2023β†’ Residue 204
NM_176869.3(PPA2):c.500C>T (p.Pro167Leu)Likely pathogenic
Sudden cardiac failure, infantile
β˜…β˜†β˜†β˜†2023β†’ Residue 167
NM_176869.3(PPA2):c.540T>A (p.Cys180Ter)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2022β†’ Residue 180
NM_176869.3(PPA2):c.528+1G>ALikely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2022
NM_176869.3(PPA2):c.606G>C (p.Trp202Cys)Likely pathogenic
Sudden cardiac failure, infantile|Sudden cardiac failure, alcohol-induced
β˜…β˜†β˜†β˜†2021β†’ Residue 202
NM_176869.3(PPA2):c.442A>T (p.Thr148Ser)Likely pathogenic
Sudden cardiac failure, infantile
β˜…β˜†β˜†β˜†2020β†’ Residue 148
NM_176869.3(PPA2):c.182C>T (p.Ser61Phe)Likely pathogenic
Sudden cardiac failure, infantile
β˜…β˜†β˜†β˜†2017β†’ Residue 61
NM_176869.3(PPA2):c.295C>A (p.Pro99Thr)Likely pathogenic
Sudden cardiac failure, infantile
β˜…β˜†β˜†β˜†β†’ Residue 99
NM_176869.3(PPA2):c.318G>T (p.Met106Ile)Pathogenic
Sudden cardiac failure, infantile
β˜†β˜†β˜†β˜†2016β†’ Residue 106
NM_176869.3(PPA2):c.280A>G (p.Met94Val)Pathogenic
Sudden cardiac failure, infantile
β˜†β˜†β˜†β˜†2016β†’ Residue 94
NM_176869.3(PPA2):c.881A>C (p.Gln294Pro)Pathogenic
Sudden cardiac failure, infantile
β˜†β˜†β˜†β˜†2016β†’ Residue 294
View on ClinVar β†—
Related Genes
ATP5F1AProtein interaction100%ATP5PDProtein interaction100%ATP5MC1Protein interaction100%ATP5MC3Protein interaction100%ATP5PFProtein interaction100%ATP5F1BProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Liver
98%
Bone Marrow
78%
Brain
68%
Lung
54%
Ovary
47%
Gene Interaction Network
Click a node to explore
PPA2ATP5F1AATP5PDATP5MC1ATP5MC3ATP5PFATP5F1B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9H2U2
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.32LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.96 [0.71–1.32]
RankingsWhere PPA2 stands among ~20K protein-coding genes
  • #5,631of 20,598
    Most Researched85
  • #2,284of 5,498
    Most Pathogenic Variants18
  • #13,897of 17,882
    Most Constrained (LOEUF)1.32
Genes detectedPPA2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PPA2-associated sudden cardiac death: extending the clinical and allelic spectrum in 20 new families.
PMID: 34400813
Genet Med Β· 2021
1.00
2
SIRT5-mediated desuccinylation of PPA2 enhances HIF-1alpha-dependent adaptation to hypoxic stress and colorectal cancer metastasis.
PMID: 40164945
EMBO J Β· 2025
0.90
3
PPA2 activates MTFP1-DNM1L fission signaling to govern mitochondrial proliferation and mitophagy.
PMID: 40873007
Autophagy Β· 2026
0.80
4
Genetic Basis of Severe Childhood-OnsetΒ Cardiomyopathies.
PMID: 30384889
J Am Coll Cardiol Β· 2018
0.70
5
PPA2-associated cardiac arrest survivor.
PMID: 39882621
Cardiol Young Β· 2025
0.60