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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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LINS1
lines homolog 1
Chromosome 15 Β· 15q26.3
NCBI Gene: 55180Ensembl: ENSG00000140471.18HGNC: HGNC:30922UniProt: Q8NG48
20PubMed Papers
21Diseases
0Drugs
32Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cognitionintellectual disability, autosomal recessive 27autosomal recessive non-syndromic intellectual disabilitygenetic disordercomplex neurodevelopmental disorder
✦AI Summary

LINS1 (lines homolog 1) is a human homolog of the Drosophila segment polarity gene that encodes an essential regulator of Wingless/Wnt signaling 1. LINS1 functions as a substrate adaptor protein within a tumor suppressor complex with UBR5 (mammalian homolog of Drosophila Hyd), targeting zinc finger proteins for ubiquitin-mediated degradation 2. At the molecular level, LINS1 accumulates in the nucleus to modulate Wnt target gene transcription through association with Ξ²-catenin 3, and mutations in LINS1 alter HuR expression during neural differentiation, potentially affecting commissural axonal growth 4. LINS1 mutations cause autosomal recessive intellectual developmental disorder-27 (MRT27) 5, with biallelic variants (nonsense, frameshift, and missense mutations) identified in affected families 67. The clinical phenotype extends beyond intellectual disability to include schizophrenia, anxiety, movement disorders, dysmorphic features, oculomotor abnormalities, dystonia, and cardiac complications 68. Notably, distinct phenotypes correlate with variant location within different LINS1 domains, suggesting genotype-phenotype relationships 1. Brain MRI typically shows nonspecific changes without major malformations 8. LINS1-related disorder represents a rare but clinically heterogeneous neurodevelopmental condition requiring expanded clinical recognition.

Sources cited
1
LINS1 mutations cause rare recessive intellectual disability; nonsense mutations can present with schizophrenia and anxiety
PMID: 34450347
2
LINS1 encodes a regulator of wingless/Wnt signaling; variants show domain-specific phenotypes including movement disorders, cardiac complications, and high clinical variation
PMID: 38563234
3
LINS1 (mammalian Lin) functions as substrate adaptor in tumor suppressor complex with UBR5; links epigenetic and protein degradation pathways
PMID: 39137945
4
LINS1 mutations cause non-syndromic intellectual disability; LINS1 alters ELAV1/HuR expression affecting axonal growth and acts with Ξ²-catenin in Wnt signaling
PMID: 28181389
5
Human WINS1/LINS1 protein is homologous to Drosophila Lines; accumulates in nucleus to modulate Wnt target genes through Ξ²-catenin association
PMID: 12119551
6
LINS1 frameshift mutation causes complex neurodevelopmental syndrome with developmental regression, oculomotor signs, dystonia, and intrafamilial phenotypical variability
PMID: 32802957
7
Novel LINS1 missense variants identified in autosomal recessive intellectual disability families; expands genetic landscape of ARID
PMID: 41656075
8
LINS1 frameshift variants cause autosomal recessive mental retardation-27 (MRT27)
PMID: 31922598
Disease Associationsβ“˜21
intellectual disability, autosomal recessive 27Open Targets
0.75Strong
autosomal recessive non-syndromic intellectual disabilityOpen Targets
0.71Strong
genetic disorderOpen Targets
0.39Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Intellectual disabilityOpen Targets
0.34Weak
autismOpen Targets
0.33Weak
Epidermal Inclusion CystOpen Targets
0.14Weak
Respiratory insufficiencyOpen Targets
0.14Weak
open-angle glaucomaOpen Targets
0.14Weak
lower urinary tract calculusOpen Targets
0.13Weak
glaucomaOpen Targets
0.13Weak
phobic disorderOpen Targets
0.13Weak
central nervous system infectionOpen Targets
0.13Weak
ovarian dysfunctionOpen Targets
0.13Weak
spondylolisthesisOpen Targets
0.12Weak
rectosigmoid junction neoplasmOpen Targets
0.12Weak
early-onset non-syndromic cataractOpen Targets
0.11Weak
microcephalyOpen Targets
0.11Weak
Total congenital cataractOpen Targets
0.10Suggestive
Partial congenital cataractOpen Targets
0.10Suggestive
Intellectual developmental disorder, autosomal recessive 27UniProt
Pathogenic Variants32
NM_001040616.3(LINS1):c.982_985del (p.His328fs)Pathogenic
not provided|Intellectual disability, autosomal recessive 27
β˜…β˜…β˜†β˜†2025β†’ Residue 328
NM_001040616.3(LINS1):c.1178T>G (p.Leu393Ter)Pathogenic
not provided|Intellectual disability, autosomal recessive 27
β˜…β˜…β˜†β˜†2024β†’ Residue 393
NM_001040616.3(LINS1):c.2020dup (p.Ser674fs)Likely pathogenic
Inborn genetic diseases|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 674
NM_001040616.3(LINS1):c.1460del (p.Asn487fs)Pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2025β†’ Residue 487
NM_001040616.3(LINS1):c.1557_1558insG (p.Phe520fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 520
NM_001040616.3(LINS1):c.1147dup (p.Arg383fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 383
NM_001040616.3(LINS1):c.244_248del (p.Met82fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 82
NM_001040616.3(LINS1):c.1219_1222+1delPathogenic
Intellectual disability, autosomal recessive 27|Intellectual disability
β˜…β˜†β˜†β˜†2024
NM_001040616.3(LINS1):c.274C>T (p.Gln92Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 92
NM_001040616.3(LINS1):c.2134del (p.Arg711_Ile712insTer)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2024β†’ Residue 711
NM_001040616.3(LINS1):c.1672_1679del (p.Gly558fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 558
NM_001040616.3(LINS1):c.717C>A (p.Cys239Ter)Pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2024β†’ Residue 239
NM_001040616.3(LINS1):c.2185A>T (p.Lys729Ter)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2024β†’ Residue 729
NM_001040616.3(LINS1):c.1605G>A (p.Trp535Ter)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2023β†’ Residue 535
NM_001040616.3(LINS1):c.631+1G>ALikely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2023
NM_001040616.3(LINS1):c.1921_1923delinsAC (p.Glu641fs)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2022β†’ Residue 641
NM_001040616.3(LINS1):c.1727_1736del (p.Arg576fs)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2022β†’ Residue 576
NM_001040616.3(LINS1):c.1222+2T>CLikely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2022
NM_001040616.3(LINS1):c.1424_1425del (p.Gln475fs)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2022β†’ Residue 475
NM_001040616.3(LINS1):c.1432G>T (p.Glu478Ter)Likely pathogenic
Intellectual disability, autosomal recessive 27
β˜…β˜†β˜†β˜†2021β†’ Residue 478
View on ClinVar β†—
Related Genes
JAKMIP1Shared pathway100%DGCR2Shared pathway50%RP9Shared pathway50%CBR3Shared pathway33%LCE1DShared pathway33%OR52B4Shared pathway33%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
68%
Lung
62%
Heart
55%
Liver
55%
Brain
45%
Gene Interaction Network
Click a node to explore
LINS1JAKMIP1DGCR2RP9CBR3LCE1DOR52B4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q8NG48
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.87LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.61 [0.44–0.87]
RankingsWhere LINS1 stands among ~20K protein-coding genes
  • #14,187of 20,598
    Most Researched20
  • #1,769of 5,498
    Most Pathogenic Variants32
  • #7,629of 17,882
    Most Constrained (LOEUF)0.87
Genes detectedLINS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Identification of a novel nonsense homozygous mutation of LINS1 gene in two sisters with intellectual disability, schizophrenia, and anxiety.
PMID: 34450347
Biomed J Β· 2021
1.00
2
Domain-specific phenotypes in LINS1-related disorder-A Chinese family with the Q92X variant and literature review.
PMID: 38563234
Am J Med Genet C Semin Med Genet Β· 2024
0.90
3
Hyd/UBR5 defines a tumor suppressor pathway that links Polycomb repressive complex to regulated protein degradation in tissue growth control and tumorigenesis.
PMID: 39137945
Genes Dev Β· 2024
0.80
4
Novel LINS1 missense mutation in a family with non-syndromic intellectual disability.
PMID: 28181389
Am J Med Genet A Β· 2017
0.70
5
Molecular cloning and characterization of human WINS1 and mouse Wins2, homologous to Drosophila segment polarity gene Lines (Lin).
PMID: 12119551
Int J Mol Med Β· 2002
0.60