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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LIPA
lipase A, lysosomal acid type
Chromosome 10 Β· 10q23.31
NCBI Gene: 3988Ensembl: ENSG00000107798.18HGNC: HGNC:6617UniProt: A0A0A0MT32
115PubMed Papers
22Diseases
0Drugs
158Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
sterol ester esterase activitylipase activitysterol metabolic processlysosomecholesteryl ester storage diseaseWolman diseaselysosomal acid lipase deficiencycoronary artery disease
✦AI Summary

LIPA (lipase A, lysosomal acid type) encodes lysosomal acid lipase, a critical enzyme that catalyzes the hydrolysis of cholesteryl esters and triglycerides within lysosomes. The enzyme functions by degrading cholesteryl ester core lipids from endocytosed low-density lipoproteins to generate free fatty acids and cholesterol, and hydrolyzes triglycerides and diglycerides with preference for sn-1 or sn-3 positions 1. LIPA requires lysosomal digestion for proper activation of transcription factors like PPAR and LXR in macrophages during efferocytosis 1. Mechanistically, LIPA enhances lysosomal biogenesis and increases free fatty acid production to fuel mitochondrial fatty acid oxidation, promoting anti-inflammatory macrophage reprogramming 2. Disease relevance includes Wolman disease, caused by complete absence of functional LIPA due to genetic mutations, presenting with organomegaly, malabsorption, and adrenal calcifications that can mimic hemophagocytic lymphohistiocytosis 3. Clinically, LIPA represents a significant cardiovascular risk factor, as coronary artery disease-risk alleles increase LIPA expression specifically in monocytes/macrophages, leading to larger atherosclerotic lesions and altered macrophage function 4. Additionally, LIPA serves as a therapeutic target in solid tumors, where small molecule inhibitors induce endoplasmic reticulum stress independent of lipase activity 5.

Sources cited
1
LIPA catalyzes hydrolysis of cholesteryl esters and triglycerides, and is required for PPAR and LXR activation in macrophages during efferocytosis
PMID: 34025647
2
LIPA enhances lysosomal biogenesis and fatty acid oxidation, promoting anti-inflammatory macrophage reprogramming
PMID: 32316875
3
Wolman disease is caused by complete absence of functional LIPA due to genetic mutations, presenting with organomegaly and malabsorption
PMID: 37641143
4
Coronary artery disease-risk alleles increase LIPA expression in monocytes/macrophages, leading to larger atherosclerotic lesions
PMID: 40827730
5
LIPA serves as a therapeutic target in solid tumors through small molecule inhibitors that induce ER stress independent of lipase activity
PMID: 35654861
Disease Associationsβ“˜22
cholesteryl ester storage diseaseOpen Targets
0.82Strong
Wolman diseaseOpen Targets
0.80Strong
lysosomal acid lipase deficiencyOpen Targets
0.77Strong
coronary artery diseaseOpen Targets
0.57Moderate
myocardial infarctionOpen Targets
0.55Moderate
cardiovascular diseaseOpen Targets
0.50Moderate
Abdominal Aortic AneurysmOpen Targets
0.50Moderate
coronary atherosclerosisOpen Targets
0.48Moderate
cholestasisOpen Targets
0.46Moderate
heart diseaseOpen Targets
0.43Moderate
heart failureOpen Targets
0.43Moderate
aortic aneurysmOpen Targets
0.43Moderate
aneurysmOpen Targets
0.43Moderate
occlusion precerebral arteryOpen Targets
0.43Moderate
Abnormality of the cardiovascular systemOpen Targets
0.42Moderate
familial hypercholesterolemiaOpen Targets
0.37Weak
HypercholesterolemiaOpen Targets
0.37Weak
hydrops fetalisOpen Targets
0.37Weak
neuroinflammatory disorderOpen Targets
0.37Weak
large artery strokeOpen Targets
0.35Weak
Cholesteryl ester storage diseaseUniProt
Wolman diseaseUniProt
Pathogenic Variants158
NM_000235.4(LIPA):c.894G>A (p.Gln298=)Pathogenic
Lysosomal acid lipase deficiency|not provided|LIPA-related disorder|Wolman disease|Cholesteryl ester storage disease|Cardiovascular phenotype|Wolman disease;Cholesteryl ester storage disease|Familial cancer of breast|Colorectal cancer|Ovarian serous cystadenocarcinoma|Acute myeloid leukemia|Hepatocellular carcinoma|Melanoma|Malignant tumor of urinary bladder|Lung cancer
β˜…β˜…β˜†β˜†2026β†’ Residue 298
NM_000235.4(LIPA):c.796G>T (p.Gly266Ter)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease|not provided|Cholesteryl ester storage disease;Wolman disease|LIPA-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 266
NM_000235.4(LIPA):c.594dup (p.Ala199fs)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease|not provided|LIPA-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 199
NM_000235.4(LIPA):c.894G>C (p.Gln298His)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease
β˜…β˜…β˜†β˜†2026β†’ Residue 298
NM_000235.4(LIPA):c.398del (p.Leu132_Ser133insTer)Pathogenic
not provided|Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease;Wolman disease
β˜…β˜…β˜†β˜†2025β†’ Residue 132
NM_000235.4(LIPA):c.1052ACG[1] (p.Asp352del)Pathogenic
Wolman disease|Lysosomal acid lipase deficiency|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 352
NM_000235.4(LIPA):c.780_781del (p.Cys261fs)Pathogenic
Wolman disease|Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 261
NM_000235.4(LIPA):c.260G>T (p.Gly87Val)Pathogenic
Lysosomal acid lipase deficiency|not provided|Wolman disease|Cholesteryl ester storage disease|Wolman disease;Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 87
NM_000235.4(LIPA):c.253C>A (p.Gln85Lys)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 85
NM_000235.4(LIPA):c.599T>C (p.Leu200Pro)Pathogenic
Wolman disease|Lysosomal acid lipase deficiency|Cholesteryl ester storage disease|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2025β†’ Residue 200
NM_000235.4(LIPA):c.111+1G>APathogenic
Wolman disease|Cholesteryl ester storage disease|Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025
NM_000235.4(LIPA):c.894+1G>APathogenic
Wolman disease|Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025
NM_000235.4(LIPA):c.883C>T (p.His295Tyr)Likely pathogenic
Wolman disease|Wolman disease;Cholesteryl ester storage disease|Cholesteryl ester storage disease|Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 295
NM_000235.4(LIPA):c.521C>T (p.Ser174Phe)Pathogenic
Wolman disease|Lysosomal acid lipase deficiency|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 174
NM_000235.4(LIPA):c.684del (p.Phe228fs)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 228
NM_000235.4(LIPA):c.822+1G>ALikely pathogenic
Wolman disease|Cholesteryl ester storage disease|Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025
NM_000235.4(LIPA):c.881T>C (p.Leu294Ser)Likely pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 294
NM_000235.4(LIPA):c.1024G>A (p.Gly342Arg)Pathogenic
Lysosomal acid lipase deficiency|Wolman disease|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 342
NM_000235.4(LIPA):c.866C>G (p.Ser289Cys)Likely pathogenic
Lysosomal acid lipase deficiency
β˜…β˜…β˜†β˜†2025β†’ Residue 289
NM_000235.4(LIPA):c.482del (p.Asn161fs)Pathogenic
Wolman disease|Lysosomal acid lipase deficiency|Cholesteryl ester storage disease
β˜…β˜…β˜†β˜†2025β†’ Residue 161
View on ClinVar β†—
Related Genes
LIPCProtein interaction98%CH25HProtein interaction97%LIPBProtein interaction96%SCGB1D2Protein interaction96%CYP46A1Protein interaction95%PNLIPProtein interaction94%
Tissue Expression6 tissues
Brain
100%
Lung
55%
Bone Marrow
48%
Liver
44%
Heart
35%
Ovary
24%
Gene Interaction Network
Click a node to explore
LIPALIPCCH25HLIPBSCGB1D2CYP46A1PNLIP
PROTEIN STRUCTURE
Preparing viewer…
PDB6V7N Β· 2.62 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.38LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.96 [0.68–1.38]
RankingsWhere LIPA stands among ~20K protein-coding genes
  • #4,122of 20,598
    Most Researched115 Β· top quartile
  • #472of 5,498
    Most Pathogenic Variants158 Β· top 10%
  • #14,347of 17,882
    Most Constrained (LOEUF)1.38
Genes detectedLIPA
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Amount and intensity of daily total physical activity, step count and risk of incident cancer in the UK Biobank.
PMID: 40139674
Br J Sports Med Β· 2025
1.00
2
Single-cell transcriptome-wide Mendelian randomization and colocalization analyses uncover cell-specific mechanisms in atherosclerotic cardiovascular disease.
PMID: 40555237
Am J Hum Genet Β· 2025
0.90
3
Lysosome-Dependent LXR and PPARΞ΄ Activation Upon Efferocytosis in Human Macrophages.
PMID: 34025647
Front Immunol Β· 2021
0.80
4
Wolman disease presenting with hemophagocytic lymphohistiocytosis syndrome and a novel LIPA gene variant: a case report and review of theΒ literature.
PMID: 37641143
J Med Case Rep Β· 2023
0.70
5
Sorting Nexin 10 Mediates Metabolic Reprogramming of Macrophages in Atherosclerosis Through the Lyn-Dependent TFEB Signaling Pathway.
PMID: 32316875
Circ Res Β· 2020
0.60