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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LSM10
LSM10, U7 small nuclear RNA associated
Chromosome 1 · 1p34.3
NCBI Gene: 84967Ensembl: ENSG00000181817.7HGNC: HGNC:17562UniProt: Q969L4
29PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
Cajal bodyU7 snRNPU7 snRNA bindingpositive regulation of G1/S transition of mitotic cell cycleneurodegenerative diseaseFraser syndromemajor depressive disorderobsessive-compulsive disorder
✦AI Summary

LSM10 is a U7-specific Sm-like protein that functions as a core component of the U7 snRNP complex, which processes replication-dependent histone pre-mRNAs 1. In the U7 snRNP, LSM10 replaces the spliceosomal SmD1 protein within a specialized seven-protein Sm ring 1, and its incorporation is dictated by the unique Sm-binding sequence of U7 snRNA 2. LSM10 localizes to Cajal bodies and histone locus bodies where it participates in the 3'-end cleavage of histone mRNAs, generating the characteristic stem-loop structure rather than poly(A) tails 3. Beyond 3'-end processing, LSM10 is essential for cell cycle regulation. Depletion of LSM10 causes cell cycle arrest in early G1 phase, preventing progression to S phase 4. Additionally, LSM10-containing U7 snRNP represses histone gene transcription during cell cycle arrest through interaction with hnRNP UL1, restricting histone synthesis to S phase 5. While LSM10 overexpression increases U7 snRNA levels, it does not enhance histone pre-mRNA processing activity, indicating that other factors like ZFP100 are limiting for catalytic function 4. The LSM10/LSM11-containing U7 snRNP composition is evolutionarily conserved from invertebrates to mammals 6, highlighting its fundamental importance in controlling histone gene expression during DNA replication.

Sources cited
1
LSM10 replaces spliceosomal SmD1 in the U7 snRNP core complex and is essential for histone pre-mRNA 3'-end processing
PMID: 31819999
2
LSM10 is a 14 kDa Sm-like protein that lacks SmD1 and SmD2, and its incorporation into U7 snRNP is dictated by U7 snRNA's special Sm binding site
PMID: 11574479
3
LSM10 marks histone locus bodies and is required for histone mRNA 3'-end processing in normal cells, but its localization is disrupted in cancer cells
PMID: 19277982
4
LSM10 depletion causes cell cycle arrest in early G1, preventing progression to S phase, while LSM10 overexpression increases U7 snRNA but not processing activity
PMID: 16914750
5
LSM10 participates in U7 snRNP-mediated transcriptional repression of histone genes outside S phase through interaction with hnRNP UL1
PMID: 22451911
6
LSM10 orthologs are evolutionarily conserved from Drosophila to vertebrates and maintain association with U7 snRNA and Lsm11
PMID: 14624008
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.54Moderate
Fraser syndromeOpen Targets
0.11Weak
major depressive disorderOpen Targets
0.05Suggestive
anorexia nervosaOpen Targets
0.04Suggestive
attention deficit hyperactivity disorderOpen Targets
0.04Suggestive
neurotic disorderOpen Targets
0.04Suggestive
obsessive-compulsive disorderOpen Targets
0.04Suggestive
severe malarial anemiaOpen Targets
0.04Suggestive
bone fractureOpen Targets
0.04Suggestive
bipolar disorderOpen Targets
0.04Suggestive
schizophreniaOpen Targets
0.04Suggestive
HypervolemiaOpen Targets
0.04Suggestive
autism spectrum disorderOpen Targets
0.03Suggestive
major depressive episodeOpen Targets
0.03Suggestive
obesityOpen Targets
0.03Suggestive
Tourette syndromeOpen Targets
0.03Suggestive
insomniaOpen Targets
0.02Suggestive
Abruptio PlacentaeOpen Targets
0.02Suggestive
male reproductive organ cancerOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CLNS1AProtein interaction100%SMN1Protein interaction100%SNRPD3Protein interaction100%SYMPKProtein interaction100%SNRNP35Protein interaction100%ZMAT5Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Liver
85%
Lung
76%
Brain
58%
Ovary
55%
Bone Marrow
28%
Gene Interaction Network
Click a node to explore
LSM10CLNS1ASMN1SNRPD3SYMPKSNRNP35ZMAT5
PROTEIN STRUCTURE
Preparing viewer…
PDB6V4X · 3.20 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.59LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.87 [0.49–1.59]
RankingsWhere LSM10 stands among ~20K protein-coding genes
  • #12,179of 20,598
    Most Researched29
  • #15,621of 17,882
    Most Constrained (LOEUF)1.59
Genes detectedLSM10
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Composition and processing activity of a semi-recombinant holo U7 snRNP.
PMID: 31819999
Nucleic Acids Res · 2020
1.00
2
The subnuclear organization of histone gene regulatory proteins and 3' end processing factors of normal somatic and embryonic stem cells is compromised in selected human cancer cell types.
PMID: 19277982
J Cell Physiol · 2009
0.90
3
Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster.
PMID: 14624008
RNA · 2003
0.80
4
ZFP100, a component of the active U7 snRNP limiting for histone pre-mRNA processing, is required for entry into S phase.
PMID: 16914750
Mol Cell Biol · 2006
0.70
5
The special Sm core structure of the U7 snRNP: far-reaching significance of a small nuclear ribonucleoprotein.
PMID: 15526162
Cell Mol Life Sci · 2004
0.60