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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
Chromosome 19 · 19p13.3
NCBI Gene: 51690Ensembl: ENSG00000130332.16HGNC: HGNC:20470UniProt: Q9UK45
68PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleusprotein bindingcytoplasmLsm2-8 complexneurodegenerative diseaseleukodystrophyJoubert syndrome 36hepatocellular carcinoma
✦AI Summary

LSM7 is an RNA-binding protein and core component of the U4/U6-U5 tri-snRNP complex that plays critical roles in pre-mRNA splicing and spliceosome assembly 12. As part of the heptameric LSM2-8 complex, LSM7 binds specifically to the 3'-terminal U-tract of U6 snRNA and functions within the precatalytic spliceosome 3. Beyond splicing, LSM7 participates in mRNA degradation pathways; the Pat1-Lsm complex containing LSM7 stabilizes autophagy-related (ATG) mRNA transcripts during nitrogen starvation by preventing 3' to 5' exosomal degradation 4. LSM7 also regulates stress granule formation through liquid-liquid phase separation, creating condensates that serve as scaffolding for stress response mechanisms 5. In disease contexts, biallelic LSM7 variants cause leukodystrophy and neurodegeneration through defective assembly of LSM protein complexes, impairing oligodendrocyte development in zebrafish models 2. LSM7 is overexpressed in multiple cancers—including breast cancer, hepatocellular carcinoma, and non-small cell lung cancer—where it promotes metastasis and poor prognosis 678. In breast cancer specifically, LSM7 enhances expression of the CD44s splice isoform, driving invasion and metastasis 6. Emerging evidence suggests LSM7 may be implicated in Parkinson's disease pathogenesis 9. These findings position LSM7 as both a critical splicing regulator and a potential therapeutic target across multiple disease contexts.

Sources cited
1
LSM7 functions as a component of the U4/U6-U5 tri-snRNP complex involved in spliceosome assembly
PMID: 28781166
2
LSM7 is part of LSM complexes; biallelic variants cause leukodystrophy and impair oligodendrocyte development and CNS function
PMID: 35047835
3
The heptameric LSM2-8 complex containing LSM7 binds specifically to the 3'-terminal U-tract of U6 snRNA
PMID: 10523320
4
The Pat1-Lsm complex containing LSM7 stabilizes ATG mRNA during nitrogen starvation by preventing exosomal degradation
PMID: 30527663
5
LSM7 forms phase-separated condensates that trigger stress granule formation through liquid-liquid phase separation
PMID: 35764627
6
LSM7 is overexpressed in metastatic breast cancer, promotes cell migration and invasion, and enhances CD44s isoform expression
PMID: 39182568
7
LSM7 is significantly overexpressed in hepatocellular carcinoma and correlates with poor prognosis and altered immune infiltration
PMID: 41553301
8
LSM7 increases immune infiltration and suppresses tumor progression in non-small cell lung cancer
PMID: 41839471
9
LSM7 is implicated in Parkinson's disease pathogenesis through burden tests of rare variants
PMID: 37804111
Disease Associationsⓘ21
neurodegenerative diseaseOpen Targets
0.53Moderate
leukodystrophyOpen Targets
0.40Moderate
Joubert syndrome 36Open Targets
0.27Weak
hepatocellular carcinomaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.05Suggestive
breast cancerOpen Targets
0.04Suggestive
cancerOpen Targets
0.02Suggestive
Cerebellar atrophyOpen Targets
0.01Suggestive
ovarian carcinomaOpen Targets
0.01Suggestive
Neurodevelopmental disorderOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
Mantle cell lymphomaOpen Targets
0.01Suggestive
nervous system diseaseOpen Targets
0.01Suggestive
Huntington diseaseOpen Targets
0.00Suggestive
transitional cell carcinoma of kidneyOpen Targets
0.00Suggestive
BK-virus nephropathyOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
endometrial cancerOpen Targets
0.00Suggestive
Leukodystrophy and cerebellar atrophyUniProt
Pathogenic Variants2
NM_016199.3(LSM7):c.206G>C (p.Arg69Pro)Likely pathogenic
In utero death|Joubert syndrome 36
★☆☆☆2025→ Residue 69
NM_016199.3(LSM7):c.121G>A (p.Asp41Asn)Pathogenic
Leukodystrophy|LSM7-related leukodystrophy and cerebellar atrophy
☆☆☆☆2025→ Residue 41
View on ClinVar ↗
Related Genes
SNU13Protein interaction100%SNRNP27Protein interaction100%LSM1Protein interaction100%SF3B3Protein interaction100%SNRPGProtein interaction100%SF3B5Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
67%
Liver
67%
Brain
53%
Lung
48%
Heart
19%
Gene Interaction Network
Click a node to explore
LSM7SNU13SNRNP27LSM1SF3B3SNRPGSF3B5
PROTEIN STRUCTURE
Preparing viewer…
PDB8H6L · 2.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.73LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.12 [0.73–1.73]
RankingsWhere LSM7 stands among ~20K protein-coding genes
  • #6,913of 20,598
    Most Researched68
  • #4,387of 5,498
    Most Pathogenic Variants2
  • #16,236of 17,882
    Most Constrained (LOEUF)1.73
Genes detectedLSM7
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
RNA-binding protein LSM7 facilitates breast cancer metastasis through mediating alternative splicing of CD44.
PMID: 39182568
Life Sci · 2024
1.00
2
Lsm7 phase-separated condensates trigger stress granule formation.
PMID: 35764627
Nat Commun · 2022
0.90
3
PLPP2: Potential therapeutic target of breast cancer in PLPP family.
PMID: 36332491
Immunobiology · 2022
0.80
4
Variants in
PMID: 35047835
HGG Adv · 2021
0.70
5
Integrative multiomics dissection of LSM7 as a prognostic biomarker and therapeutic target in hepatocellular carcinoma.
PMID: 41553301
Sci Prog · 2026
0.60