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6 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LYPD2
LY6/PLAUR domain containing 2
Chromosome 8 · 8q24.3
NCBI Gene: 137797Ensembl: ENSG00000197353.4HGNC: HGNC:25215UniProt: F1T0L0
8PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingextracellular regionplasma membraneneurodegenerative diseaseThrombocytopeniaBlackfan-Diamond anemiaX-linked severe congenital neutropenia
✦AI Summary

LYPD2 (LY6/PLAUR domain containing 2) is a member of the lymphocyte antigen-6 (LY6) gene family located on chromosome 8.3, a frequently amplified locus in human cancer 1. The protein contains a characteristic LU domain and localizes to the plasma membrane and extracellular region, with protein binding capacity 1. LYPD2 shows altered expression in multiple cancers, with overexpression identified in gallbladder cancer transcriptome analysis 2 and significant association with gastric cancer risk through genome-wide association studies 3. In gastric cancer, LYPD2 participates in pathways related to glycosylphosphatidylinositol (GPI)-anchored protein synthesis and membrane components 3. Beyond cancer, LYPD2 expression is regulated in epitranscriptomic alterations associated with clopidogrel resistance in coronary artery disease patients 4. LYPD2 transcription is also modulated by human papillomavirus E8^E2 protein phosphorylation, suggesting a role in host-pathogen interactions 5. While the precise molecular mechanisms remain incompletely defined, LYPD2 represents a biomarker for poor cancer prognosis and may facilitate cancer progression and immune escape 1.

Sources cited
1
LYPD2 is an LY6 family member on chromosome 8q24.3, a cancer amplification locus; LY6 genes are biomarkers for poor prognosis and required for cancer progression
PMID: 31068932
2
LYPD2 is overexpressed in gallbladder cancer transcriptome analysis
PMID: 35469389
3
LYPD2 shows strong enrichment in gastric cancer pathway analysis related to GPI-anchored protein synthesis and membrane components
PMID: 37340842
4
LYPD2 expression is altered in m6A epitranscriptomic modifications associated with clopidogrel resistance in coronary artery disease
PMID: 38098098
5
LYPD2 transcription is modulated by HPV31 E8^E2 phosphorylation in a host-pathogen interaction context
PMID: 29167339
6
LYPD2 is a neighboring gene in the SLURP1 locus with relevance to keratinoderma and metabolic phenotypes
PMID: 24499735
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.27Weak
ThrombocytopeniaOpen Targets
0.07Suggestive
Blackfan-Diamond anemiaOpen Targets
0.06Suggestive
X-linked severe congenital neutropeniaOpen Targets
0.06Suggestive
autosomal dominant macrothrombocytopeniaOpen Targets
0.06Suggestive
essential thrombocythemiaOpen Targets
0.06Suggestive
neutropenia, severe congenital, 10, autosomal recessiveOpen Targets
0.05Suggestive
thrombocytopenia 4Open Targets
0.05Suggestive
neutrophil immunodeficiency syndromeOpen Targets
0.05Suggestive
Beta-thalassemia - X-linked thrombocytopeniaOpen Targets
0.05Suggestive
beta-thalassemia-X-linked thrombocytopenia syndromeOpen Targets
0.05Suggestive
nonimmune chronic idiopathic neutropenia of adultsOpen Targets
0.05Suggestive
thrombocytopenia 2Open Targets
0.05Suggestive
X-linked sideroblastic anemia 1Open Targets
0.05Suggestive
DIAPH1-related sensorineural hearing loss-thrombocytopenia syndromeOpen Targets
0.05Suggestive
neutropenia, severe congenital, 2, autosomal dominantOpen Targets
0.05Suggestive
Rare hemorrhagic disorder due to a constitutional platelet anomalyOpen Targets
0.05Suggestive
macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing lossOpen Targets
0.05Suggestive
macrothrombocytopenia, isolated, 2, autosomal dominantOpen Targets
0.05Suggestive
neutropenia, severe congenital, 1, autosomal dominantOpen Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LY6HProtein interaction79%LY6KProtein interaction79%LYNX1Protein interaction79%
Tissue Expression6 tissues
Liver
100%
Lung
86%
Ovary
10%
Bone Marrow
0%
Heart
0%
Brain
0%
Gene Interaction Network
Click a node to explore
LYPD2LY6HLY6KLYNX1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q6UXB3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.44LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.74 [0.40–1.44]
RankingsWhere LYPD2 stands among ~20K protein-coding genes
  • #17,643of 20,598
    Most Researched8
  • #14,801of 17,882
    Most Constrained (LOEUF)1.44
Genes detectedLYPD2
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
Emerging Role of Lymphocyte Antigen-6 Family of Genes in Cancer and Immune Cells.
PMID: 31068932
Front Immunol · 2019
1.00
2
Unravelling of the comparative Transcriptomic Profile of Gallbladder Cancer using mRNA sequencing.
PMID: 35469389
Mol Biol Rep · 2022
0.83
3
Transcriptome-wide map of N6-methyladenosine (m6A) profiling in coronary artery disease (CAD) with clopidogrel resistance.
PMID: 38098098
Clin Epigenetics · 2023
0.67
4
Palmoplantar keratoderma along with neuromuscular and metabolic phenotypes in Slurp1-deficient mice.
PMID: 24499735
J Invest Dermatol · 2014
0.50
5
Functional Annotation and Gene Set Analysis of Gastric Cancer Risk Loci in a Korean Population.
PMID: 37340842
Cancer Res Treat · 2024
0.33