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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LY6H
lymphocyte antigen 6 family member H
Chromosome 8 · 8q24.3
NCBI Gene: 4062Ensembl: ENSG00000176956.13HGNC: HGNC:6728UniProt: O94772
12PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingacetylcholine receptor inhibitor activityacetylcholine receptor bindingacetylcholine receptor signaling pathway
✦AI Summary

LY6H (lymphocyte antigen 6 family member H) is a GPI-anchored cell surface glycoprotein that functions as a modulator of nicotinic acetylcholine receptor (nAChR) activity in the nervous system 1. The protein specifically inhibits α7-containing nAChRs by competing with NACHO for access to α7 subunits, thereby regulating receptor assembly and maintaining activity within physiological ranges 2. LY6H is highly expressed in specific brain subdivisions and plays a crucial role in neuronal function and viability by preventing excessive Ca2+ influx through α7 nAChRs 12. In Alzheimer's disease, amyloid β-driven reduction in LY6H disrupts this regulatory balance, leading to increased phosphorylated tau and α7-mediated neurotoxicity 2. LY6H also serves as a specific cell surface marker for pancreatic delta cells and can be used to enrich these cells from human islet preparations 3. Recent studies have identified LY6H as a potential biomarker, with reduced expression associated with glioma-related epilepsy 4 and novel genetic associations discovered in Alzheimer's disease through machine learning approaches 5. The protein's expression correlates with inflammatory responses in colorectal tissues, suggesting broader roles in disease pathogenesis 6.

Sources cited
1
LY6H is a GPI-anchored cell surface glycoprotein highly expressed in brain subdivisions
PMID: 9799603
2
LY6H competes with NACHO to regulate α7 nAChR assembly and prevents neurotoxicity; reduced in Alzheimer's disease
PMID: 34446574
3
LY6H serves as a specific cell surface marker for pancreatic delta cells
PMID: 41006592
4
LY6H expression is reduced in glioma-related epilepsy
PMID: 40229486
5
Novel genetic associations with LY6H identified in Alzheimer's disease
PMID: 40691194
6
LY6H expression correlates with inflammatory responses in colorectal tissues
PMID: 35794137
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LYPD6Protein interaction95%LYPD2Protein interaction79%LYNX1Protein interaction73%SLURP1Protein interaction72%LY6KProtein interaction72%PAX3Shared pathway33%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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LY6HLYPD6LYPD2LYNX1SLURP1LY6KPAX3
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O94772
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.11LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.66 [0.40–1.11]
RankingsWhere LY6H stands among ~20K protein-coding genes
  • #16,495of 20,598
    Most Researched12
  • #11,457of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedLY6H
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Machine learning in Alzheimer's disease genetics.
PMID: 40691194
Nat Commun · 2025
1.00
2
Isolation and characterization of a new member of the human Ly6 gene family (LY6H).
PMID: 9799603
Genomics · 1998
0.90
3
Identification and validation of LY6H and GRM3 as candidate biomarkers for Glioma-related epilepsy.
PMID: 40229486
Sci Rep · 2025
0.80
4
Emerging Role of Lymphocyte Antigen-6 Family of Genes in Cancer and Immune Cells.
PMID: 31068932
Front Immunol · 2019
0.70
5
Major Psychiatric Disorders, Substance Use Behaviors, and Longevity.
PMID: 38888899
JAMA Psychiatry · 2024
0.60