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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LYPLAL1
lysophospholipase like 1
Chromosome 1 · 1q41
NCBI Gene: 127018Ensembl: ENSG00000143353.13HGNC: HGNC:20440UniProt: Q5VWZ2
63PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of cGAS/STING signaling pathwaycytosolprotein bindingpalmitoyl-(protein) hydrolase activityopen-angle glaucomadiverticular diseaseHernia of the abdominal wallglaucoma
✦AI Summary

LYPLAL1 (lysophospholipase-like 1) is a palmitoyl thioesterase that catalyzes depalmitoylation of specific protein substrates, including cGAS and KCNMA1 1. The enzyme possesses a shallow active site that restricts substrate specificity to short-chain substrates, lacking phospholipase and triacylglycerol lipase activities 2. LYPLAL1 functions as a negative regulator of innate immunity by depalmitoylating cGAS, thereby preventing cGAS homodimerization and cyclic GMP-AMP synthase activity 1. This depalmitoylation mechanism is therapeutically relevant: inhibition of LYPLAL1 enhances cGAS-mediated immune responses and improves anti-tumor efficacy of PD-1 blockade 1. Metabolically, LYPLAL1 influences lipid homeostasis through esterase activity rather than depalmitoylase function in hepatocytes 3. Rare loss-of-function variants in LYPLAL1 associate with reduced liver steatosis and protection against metabolic dysfunction-associated steatotic liver disease (MASLD) 3. LYPLAL1 knockout females show reduced weight gain and adiposity on high-fat diets, revealing sex-specific metabolic effects 4. Additionally, LYPLAL1 variants influence facial morphology in Eurasian populations 5. Related long noncoding RNAs (LYPLAL1-AS1 and LYPLAL1-DT) regulate adipogenic differentiation and chemotherapy resistance, suggesting broader functional roles for the LYPLAL1 locus 6, 7.

Sources cited
1
LYPLAL1 depalmitoylates cGAS to prevent its dimerization and activation; LYPLAL1 inhibition enhances cGAS-mediated innate immune response and anti-tumor immunity
PMID: 37802025
2
LYPLAL1 is a palmitoyl thioesterase with shallow active site; lacks phospholipase and triacylglycerol lipase activity
PMID: 22052940
3
LYPLAL1 loss-of-function variants protect against MASLD; LYPLAL1 has esterase but not depalmitoylase activity in hepatocytes
PMID: 41786251
4
Female LYPLAL1 knockout mice show reduced weight gain and adiposity on high-fat diet, demonstrating sex-specific metabolic effects
PMID: 36748836
5
LYPLAL1 rs5781117 SNP associates with facial morphology traits in Eurasian populations
PMID: 31025105
6
Long noncoding RNA LYPLAL1-AS1 regulates adipogenic differentiation via targeting desmoplakin and Wnt/β-catenin pathway
PMID: 33993187
7
Long noncoding RNA LYPLAL1-DT promotes chemotherapy resistance in small cell lung cancer through BCL2 and autophagy pathways
PMID: 39478582
Disease Associationsⓘ20
open-angle glaucomaOpen Targets
0.38Weak
diverticular diseaseOpen Targets
0.36Weak
Hernia of the abdominal wallOpen Targets
0.34Weak
glaucomaOpen Targets
0.32Weak
diabetes mellitusOpen Targets
0.31Weak
Abnormality of the skeletal systemOpen Targets
0.31Weak
skin agingOpen Targets
0.30Weak
acneOpen Targets
0.30Weak
HerniaOpen Targets
0.28Weak
Epidermal Inclusion CystOpen Targets
0.26Weak
Inguinal herniaOpen Targets
0.26Weak
alcohol drinkingOpen Targets
0.24Weak
abdominal abscessOpen Targets
0.23Weak
vein disorderOpen Targets
0.23Weak
skin diseaseOpen Targets
0.22Weak
spermatoceleOpen Targets
0.21Weak
asthmaOpen Targets
0.21Weak
Umbilical herniaOpen Targets
0.20Weak
mastodyniaOpen Targets
0.20Weak
vertebral joint diseaseOpen Targets
0.20Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TM6SF2Protein interaction77%PPP1R3BProtein interaction77%PNPLA3Protein interaction77%ABHD13Shared pathway33%DESI2Shared pathway33%PPT2Shared pathway25%
Tissue Expression6 tissues
Heart
100%
Brain
37%
Liver
31%
Ovary
21%
Lung
13%
Bone Marrow
11%
Gene Interaction Network
Click a node to explore
LYPLAL1TM6SF2PPP1R3BPNPLA3ABHD13DESI2PPT2
PROTEIN STRUCTURE
Preparing viewer…
PDB3U0V · 1.72 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.80LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.23 [0.82–1.80]
RankingsWhere LYPLAL1 stands among ~20K protein-coding genes
  • #7,384of 20,598
    Most Researched63
  • #16,578of 17,882
    Most Constrained (LOEUF)1.80
Genes detectedLYPLAL1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Targeting LYPLAL1-mediated cGAS depalmitoylation enhances the response to anti-tumor immunotherapy.
PMID: 37802025
Mol Cell · 2023
1.00
2
Overcoming multi-drug resistance in SCLC: a synergistic approach with venetoclax and hydroxychloroquine targeting the lncRNA LYPLAL1-DT/BCL2/BECN1 pathway.
PMID: 39478582
Mol Cancer · 2024
0.90
3
Knockout of murine Lyplal1 confers sex-specific protection against diet-induced obesity.
PMID: 36748836
J Mol Endocrinol · 2023
0.80
4
LYPLAL1 Rare Loss-of-Function Variants in Humans and Deletion in Human Hepatoma Cells Protect Against MASLD.
PMID: 41786251
J Lipid Res · 2026
0.70
5
Long noncoding RNA LYPLAL1-AS1 regulates adipogenic differentiation of human mesenchymal stem cells by targeting desmoplakin and inhibiting the Wnt/β-catenin pathway.
PMID: 33993187
Cell Death Discov · 2021
0.60