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9 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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MBD3L2
methyl-CpG binding domain protein 3 like 2
Chromosome 19 · 19p13.2
NCBI Gene: 125997Ensembl: ENSG00000230522.5HGNC: HGNC:18532UniProt: Q8NHZ7
8PubMed Papers
9Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingregulation of transcription by RNA polymerase IIregulation of chromatin organizationnucleusfacioscapulohumeral muscular dystrophyneoplasmpancreatitiscancer
✦AI Summary

MBD3L2 (methyl-CpG binding domain protein 3 like 2) is a chr19-associated protein that modulates transcriptional repression through interaction with the NuRD complex. Unlike its homologs MBD2 and MBD3, MBD3L2 lacks a functional methyl-CpG binding domain and does not directly bind methylated DNA 1. Instead, MBD3L2 interacts with MBD3 and core NuRD components (HDAC1, HDAC2, MTA1, p66, RbAp46/48), enabling it to displace the MeCP1 repressive complex from methylated DNA and potentially reactivate transcription 1. MBD3L2 also promotes Tet2 enzymatic activity in converting 5-methylcytosine to 5-hydroxymethylcytosine, more effectively than MBD3, thereby reducing methylation at promoter regions of cancer-related and metabolic genes 2. MBD3L2 expression is widespread across somatic tissues and germ cell tumors 3, with developmental stage-specific roles in trophectoderm specification and early tumor development 4, 5. Clinically, MBD3L2 serves as a salivary biomarker for pancreatic cancer detection, contributing to a predictive model achieving 90% sensitivity and 95% specificity 6, 7. Elevated MBD3L2 expression correlates with tumor aggressiveness and vascular/nerve infiltration 7, and its upregulation appears in facioscapulohumeral muscular dystrophy fetal development 8.

Sources cited
1
MBD3L2 lacks methyl-CpG binding domain, interacts with MBD3 and NuRD complex components, and can displace MeCP1 complex from methylated DNA to reactivate transcription
PMID: 15701600
2
MBD3L2 is a homolog of MBD2/MBD3 lacking methyl-CpG binding domain, expressed in somatic tissues and germ cell tumors, functioning as transcriptional modulator
PMID: 12504854
3
MBD3L2 promotes Tet2 enzymatic activity more effectively than MBD3, converting 5-methylcytosine to 5-hydroxymethylcytosine at cancer-related gene promoters
PMID: 26769901
4
MBD3L2 is a salivary biomarker for pancreatic cancer detection with 90% sensitivity and 95% specificity in combination with KRAS, ACRV1, and DPM1
PMID: 19931263
5
Elevated salivary MBD3L2 expression correlates with pancreatic cancer, tumor stage, vascular and nerve infiltration, with increased expression post-resection
PMID: 41537300
6
MBD3L2 is upregulated during small-intestinal neuroendocrine tumor development from precursor to mature tumors
PMID: 41175375
7
MBD3L2 is upregulated during human trophectoderm specification in early embryonic development
PMID: 22761758
8
MBD3L2 is overexpressed in facioscapulohumeral muscular dystrophy fetal muscle biopsies at similar levels to adult FSHD
PMID: 23966205
Disease Associationsⓘ9
facioscapulohumeral muscular dystrophyOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
pancreatitisOpen Targets
0.01Suggestive
cancerOpen Targets
0.00Suggestive
immunodeficiency-centromeric instability-facial anomalies syndrome 1Open Targets
0.00Suggestive
mucous membrane pemphigoidOpen Targets
0.00Suggestive
pachyonychia congenitaOpen Targets
0.00Suggestive
chronic pancreatitisOpen Targets
0.00Suggestive
germ cell tumorOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TRIM43Protein interaction84%ZSCAN4Protein interaction78%ACRV1Protein interaction78%DUX4Protein interaction78%DPM1Protein interaction77%LEUTXProtein interaction75%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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MBD3L2TRIM43ZSCAN4ACRV1DUX4DPM1LEUTX
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8NHZ7
View on AlphaFold ↗
RankingsWhere MBD3L2 stands among ~20K protein-coding genes
  • #17,649of 20,598
    Most Researched8
Genes detectedMBD3L2
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
MBD3L2 interacts with MBD3 and components of the NuRD complex and can oppose MBD2-MeCP1-mediated methylation silencing.
PMID: 15701600
J Biol Chem · 2005
1.00
2
MBD3L1 and MBD3L2, two new proteins homologous to the methyl-CpG-binding proteins MBD2 and MBD3: characterization of MBD3L1 as a testis-specific transcriptional repressor.
PMID: 12504854
Genomics · 2002
0.89
3
MBD3L2 promotes Tet2 enzymatic activity for mediating 5-methylcytosine oxidation.
PMID: 26769901
J Cell Sci · 2016
0.78
4
Salivary transcriptomic biomarkers for detection of resectable pancreatic cancer.
PMID: 19931263
Gastroenterology · 2010
0.67
5
The expression of genes KRAS, DPM1, ACRV1, and MBD3L2 in the saliva as potential tumor markers in the detection of pancreatic cancer.
PMID: 41537300
Pol Przegl Chir · 2025
0.56