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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MKS1
MKS transition zone complex subunit 1
Chromosome 17 Β· 17q22
NCBI Gene: 54903Ensembl: ENSG00000011143.19HGNC: HGNC:7121UniProt: A0A7I2V2M0
43PubMed Papers
23Diseases
0Drugs
181Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ciliary basal bodyprotein bindingcilium assemblycytoplasmJoubert syndromeBardet-Biedl syndrome 13Meckel syndromeBardet-Biedl syndrome
✦AI Summary

MKS1 encodes a component of the transition zone complex, a structural barrier at the base of primary cilia that regulates protein diffusion between the cilium and plasma membrane 1. MKS1 is essential for ciliogenesis, functioning in centrosome migration to the apical surface and regulating ciliary length and number through modulation of centrosome duplication [UniProt]. The protein is also required for proper cell branching morphology and ciliary-dependent signaling. Mutations in MKS1 cause ciliopathies characterized by primary ciliary dysfunction. MKS1 variants are a major cause of Meckel-Gruber syndrome (MKS), a syndromic neural tube defect often resulting in perinatal lethality 2. MKS1 mutations also cause Joubert syndrome, presenting with characteristic cerebellar malformations (molar tooth sign), neurological dysfunction including ataxia and cognitive impairment, and in some cases agenesis of the corpus callosum 2. Additionally, MKS1 is implicated in Bardet-Biedl syndrome, which manifests as renal ciliopathy with cyst formation, kidney dysfunction, and systemic complications 3. Clinically, MKS1-related diseases demonstrate variable expressivity despite fully penetrant inheritance 4. The identification of MKS1 variants in diverse ciliopathy presentations underscores the critical role of transition zone integrity in multiple organ systems and developmental processes dependent on ciliary function.

Sources cited
1
MKS1 functions in the transition zone complex, and MKS1 variants cause Joubert syndrome and Meckel syndrome within the ciliopathy spectrum
PMID: 35655331
2
MKS1 mutations are a major cause of Meckel-Gruber syndrome and also cause Joubert syndrome with agenesis of the corpus callosum
PMID: 27377014
3
Bardet-Biedl syndrome, including MKS1-related forms, manifests as renal ciliopathy with kidney cysts and dysfunction
PMID: 33039432
4
MKS1 mutations follow fully penetrant inheritance in ciliopathies with no significant difference in mutation load compared to controls
PMID: 27894351
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜23
Joubert syndromeOpen Targets
0.77Strong
Bardet-Biedl syndrome 13Open Targets
0.75Strong
Meckel syndromeOpen Targets
0.75Strong
Bardet-Biedl syndromeOpen Targets
0.74Strong
Meckel syndrome, type 1Open Targets
0.73Strong
Joubert syndrome 28Open Targets
0.70Strong
polydactylyOpen Targets
0.66Moderate
Polycystic Kidney DiseaseOpen Targets
0.56Moderate
occipital encephaloceleOpen Targets
0.53Moderate
Polycystic kidney dysplasiaOpen Targets
0.53Moderate
renal fibrosisOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.45Moderate
HypotoniaOpen Targets
0.43Moderate
NystagmusOpen Targets
0.43Moderate
ciliopathyOpen Targets
0.37Weak
obesityOpen Targets
0.37Weak
Bardet-Biedl syndrome 1Open Targets
0.37Weak
eye diseaseOpen Targets
0.37Weak
Joubert syndrome with ocular defectOpen Targets
0.37Weak
chronic kidney diseaseOpen Targets
0.35Weak
Bardet-Biedl syndrome 13UniProt
Joubert syndrome 28UniProt
Meckel syndrome 1UniProt
Pathogenic Variants181
NM_017777.4(MKS1):c.1408-34_1408-6delPathogenic
Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 1|not provided|Joubert syndrome|Joubert syndrome 28|Inborn genetic diseases|Bardet-Biedl syndrome 13|MKS1-related disorder|Meckel syndrome, type 1;Joubert syndrome 28;Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2026
NM_017777.4(MKS1):c.1408-1dupPathogenic
Meckel syndrome, type 1|Joubert syndrome;Meckel-Gruber syndrome|Bardet-Biedl syndrome 13|Bardet-Biedl syndrome 13;Joubert syndrome 28;Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2026
NM_017777.4(MKS1):c.184_190del (p.Thr62fs)Pathogenic
Meckel syndrome, type 1|Joubert syndrome 28;Meckel syndrome, type 1;Bardet-Biedl syndrome 13|Joubert syndrome;Meckel-Gruber syndrome|MKS1-related disorder|Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2026β†’ Residue 62
NM_017777.4(MKS1):c.1450_1453dup (p.Thr485fs)Pathogenic
Meckel syndrome, type 1|Joubert syndrome|MKS1-related disorder|Joubert syndrome 28|Bardet-Biedl syndrome 13|Joubert syndrome;Meckel-Gruber syndrome|not provided|Joubert syndrome 28;Meckel syndrome, type 1;Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2026β†’ Residue 485
NM_017777.4(MKS1):c.1024+1G>APathogenic
Meckel syndrome, type 1|Meckel syndrome, type 1;Bardet-Biedl syndrome 13;Joubert syndrome 28|Joubert syndrome;Meckel-Gruber syndrome|not provided|MKS1-related disorder|Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2026
NM_017777.4(MKS1):c.658A>T (p.Lys220Ter)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Meckel syndrome, type 1;Joubert syndrome 28;Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2025β†’ Residue 220
NM_017777.4(MKS1):c.367C>T (p.Arg123Ter)Pathogenic
Meckel syndrome, type 1|Meckel-Gruber syndrome;Joubert syndrome|Bardet-Biedl syndrome 13|not provided|MKS1-related disorder|Meckel syndrome, type 1;Joubert syndrome 28;Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2025β†’ Residue 123
NM_017777.4(MKS1):c.190+2T>CLikely pathogenic
Meckel syndrome, type 1;Joubert syndrome 28;Bardet-Biedl syndrome 13|Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 1|Joubert syndrome 28|not provided|Bardet-Biedl syndrome 13|MKS1-related disorder|Hepatocellular carcinoma
β˜…β˜…β˜†β˜†2025
NM_017777.4(MKS1):c.1222C>T (p.Gln408Ter)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Bardet-Biedl syndrome 13|Meckel syndrome, type 1;Bardet-Biedl syndrome 13;Joubert syndrome 28|Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 408
NM_017777.4(MKS1):c.1166-2A>GLikely pathogenic
Joubert syndrome 28;Meckel syndrome, type 1;Bardet-Biedl syndrome 13|Joubert syndrome;Meckel-Gruber syndrome|Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2025
NM_017777.4(MKS1):c.959-2A>GLikely pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Bardet-Biedl syndrome 13;Meckel syndrome, type 1;Joubert syndrome 28
β˜…β˜…β˜†β˜†2025
NM_017777.4(MKS1):c.844C>T (p.Arg282Ter)Pathogenic
Meckel syndrome, type 1|Meckel syndrome, type 1;Bardet-Biedl syndrome 13;Joubert syndrome 28|Bardet-Biedl syndrome 13|Joubert syndrome;Meckel-Gruber syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 282
NM_017777.4(MKS1):c.1394del (p.Pro465fs)Pathogenic
Meckel syndrome, type 1|Bardet-Biedl syndrome 13|Joubert syndrome 28|Joubert syndrome;Meckel-Gruber syndrome|Bardet-Biedl syndrome 13;Meckel syndrome, type 1;Joubert syndrome 28
β˜…β˜…β˜†β˜†2025β†’ Residue 465
NM_017777.4(MKS1):c.472C>T (p.Arg158Ter)Pathogenic
Meckel syndrome, type 1|not provided|Joubert syndrome;Meckel-Gruber syndrome|MKS1-related disorder|Bardet-Biedl syndrome 13
β˜…β˜…β˜†β˜†2025β†’ Residue 158
NM_017777.4(MKS1):c.1208C>T (p.Ser403Leu)Pathogenic
Joubert syndrome|not provided|Bardet-Biedl syndrome 13|Meckel syndrome, type 1|Joubert syndrome 28|Meckel-Gruber syndrome;Joubert syndrome|MKS1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 403
NM_017777.4(MKS1):c.1024+1G>TPathogenic
Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2025
NM_017777.4(MKS1):c.1074C>A (p.Cys358Ter)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Bardet-Biedl syndrome 13|Bardet-Biedl syndrome 13;Meckel syndrome, type 1;Joubert syndrome 28|Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 358
NM_017777.4(MKS1):c.805dup (p.Ser269fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Bardet-Biedl syndrome 13|Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 269
NM_017777.4(MKS1):c.233T>G (p.Ile78Ser)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Meckel syndrome, type 1;Joubert syndrome 28;Bardet-Biedl syndrome 13|MKS1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 78
NM_017777.4(MKS1):c.508C>T (p.Arg170Ter)Pathogenic
not provided|Bardet-Biedl syndrome 13;Joubert syndrome 28;Meckel syndrome, type 1|Joubert syndrome;Meckel-Gruber syndrome|Bardet-Biedl syndrome 13|MKS1-related disorder|Meckel syndrome, type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 170
View on ClinVar β†—
Related Genes
BBS5Protein interaction100%TTC8Protein interaction100%BBS7Protein interaction100%TMEM138Protein interaction98%BBS10Protein interaction98%RPGRIP1LProtein interaction97%
Tissue Expression6 tissues
Ovary
100%
Liver
59%
Bone Marrow
57%
Heart
44%
Lung
42%
Brain
40%
Gene Interaction Network
Click a node to explore
MKS1BBS5TTC8BBS7TMEM138BBS10RPGRIP1L
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q9NXB0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.81 [0.67–0.99]
RankingsWhere MKS1 stands among ~20K protein-coding genes
  • #9,757of 20,598
    Most Researched43
  • #396of 5,498
    Most Pathogenic Variants181 Β· top 10%
  • #9,524of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedMKS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Ciliopathies and the Kidney: A Review.
PMID: 33039432
Am J Kidney Dis Β· 2021
1.00
2
PMID: 20301537
0.90
3
PMID: 20301500
0.80
4
Characterizing the morbid genome of ciliopathies.
PMID: 27894351
Genome Biol Β· 2016
0.70
5
Prenatal whole-exome sequencing for fetal structural anomalies: a retrospective analysis of 145 Chinese cases.
PMID: 37880672
BMC Med Genomics Β· 2023
0.60