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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
TMEM138
transmembrane protein 138
Chromosome 11 Β· 11q12.2
NCBI Gene: 51524Ensembl: ENSG00000149483.13HGNC: HGNC:26944UniProt: A0A8I5KS61
17PubMed Papers
21Diseases
0Drugs
19Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cilium assemblyciliumvacuolar membraneJoubert syndrome with oculorenal defectJoubert syndrome and related disordersJoubert syndromeMeckel syndrome
✦AI Summary

TMEM138 is a transmembrane protein essential for ciliogenesis and cilium assembly 1. Mechanistically, TMEM138 localizes to the ciliary transition zone and connecting cilium, where it is required for proper organization of this molecular gate 2. Specifically, TMEM138 facilitates localization of Ahi1 to the distal subdomain of the connecting cilium and is critical for rhodopsin trafficking and outer segment biogenesis in photoreceptors 2. TMEM138 interacts reciprocally with rhodopsin and related protein Tmem231, and its loss causes mislocalization of these proteins and photoreceptor degeneration 2. At the molecular level, TMEM138 localizes to the transition zone in a CEP-290-dependent manner as part of a distinct module separate from core MKS or NPHP components 3. Clinically, TMEM138 mutations are associated with Joubert syndrome 16, a rare autosomal recessive disorder characterized by cerebellar vermis hypoplasia and developmental delay 4. TMEM138 mutations have also been identified in oral-facial-digital syndrome cases, expanding its ciliopathy disease associations 5. Additionally, TMEM138 variants associate with skin pigmentation in African populations, suggesting pleiotropic functions 6 7. Compound mutations in TMEM138 combined with mutations in other ciliary genes can produce severe clinical phenotypes 8.

Sources cited
1
TMEM138 involvement in cell proliferation, differentiation, apoptosis, and disease pathogenesis
PMID: 40432436
2
TMEM138 localization to connecting cilium, requirement for Ahi1 localization, rhodopsin trafficking, and outer segment biogenesis
PMID: 35394880
3
TMEM138 transition zone localization is CEP-290-dependent and represents a distinct CEP-290-associated module
PMID: 26982032
4
TMEM138 mutations cause Joubert syndrome 16
PMID: 40448720
5
TMEM138 mutations associated with oral-facial-digital syndromes
PMID: 28289185
6
Compound TMEM138 mutations with other ciliary genes produce severe clinical features in Joubert syndrome patients
PMID: 27434533
7
TMEM138 variants associated with skin pigmentation in African populations
PMID: 29025994
8
TMEM138 (via DDB1/TMEM138 locus) influences skin pigmentation in African populations
PMID: 38713101
Disease Associationsβ“˜21
Joubert syndrome with oculorenal defectOpen Targets
0.81Strong
Joubert syndrome and related disordersOpen Targets
0.43Moderate
Joubert syndromeOpen Targets
0.42Moderate
Meckel syndromeOpen Targets
0.26Weak
ciliopathyOpen Targets
0.19Weak
genetic disorderOpen Targets
0.19Weak
preeclampsiaOpen Targets
0.07Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
ulcerative colitisOpen Targets
0.01Suggestive
retinal degenerationOpen Targets
0.01Suggestive
Retinal dystrophyOpen Targets
0.01Suggestive
azoospermiaOpen Targets
0.00Suggestive
eye diseaseOpen Targets
0.00Suggestive
Menkes diseaseOpen Targets
0.00Suggestive
osteosarcomaOpen Targets
0.00Suggestive
Usher syndromeOpen Targets
0.00Suggestive
neurodegenerative diseaseOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
kidney diseaseOpen Targets
0.00Suggestive
Joubert syndrome 16UniProt
Pathogenic Variants19
NM_016464.5(TMEM138):c.37_38del (p.Leu13fs)Pathogenic
Joubert syndrome 16
β˜…β˜…β˜†β˜†2025β†’ Residue 13
NM_016464.5(TMEM138):c.287A>G (p.His96Arg)Pathogenic
Joubert syndrome 16|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 96
NM_016464.5(TMEM138):c.128+5G>APathogenic
Joubert syndrome 16|Joubert syndrome and related disorders|not provided|Uterine corpus endometrial carcinoma
β˜…β˜…β˜†β˜†2025
NM_016464.5(TMEM138):c.380C>T (p.Ala127Val)Pathogenic
Joubert syndrome 16
β˜…β˜…β˜†β˜†2024β†’ Residue 127
NM_016464.5(TMEM138):c.306_307dup (p.Arg103fs)Pathogenic
Joubert syndrome 16
β˜…β˜…β˜†β˜†2024β†’ Residue 103
NM_016464.5(TMEM138):c.307del (p.Arg103fs)Pathogenic
Joubert syndrome 16|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 103
NM_016464.5(TMEM138):c.97_98del (p.Lys33fs)Likely pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2025β†’ Residue 33
NM_016464.5(TMEM138):c.300+1G>TLikely pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2025
NM_016464.5(TMEM138):c.293G>A (p.Trp98Ter)Pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2024β†’ Residue 98
NM_016464.5(TMEM138):c.306dup (p.Arg103fs)Pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2024β†’ Residue 103
NM_016464.5(TMEM138):c.128+2T>GLikely pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2024
NM_016464.5(TMEM138):c.37del (p.Leu13fs)Likely pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2024β†’ Residue 13
NM_016464.5(TMEM138):c.94C>T (p.Gln32Ter)Pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2023β†’ Residue 32
NM_016464.5(TMEM138):c.66_69del (p.Phe23fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 23
NM_016464.5(TMEM138):c.311G>A (p.Trp104Ter)Pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2022β†’ Residue 104
NM_016464.5(TMEM138):c.83del (p.Phe27_Ser28insTer)Pathogenic
Joubert syndrome 16
β˜…β˜†β˜†β˜†2022β†’ Residue 27
NM_016464.5(TMEM138):c.376G>A (p.Ala126Thr)Pathogenic
Joubert syndrome 16
β˜†β˜†β˜†β˜†2012β†’ Residue 126
NM_016464.5(TMEM138):c.377-3C>GPathogenic
Joubert syndrome 16
β˜†β˜†β˜†β˜†
NM_016464.5(TMEM138):c.134A>G (p.Gln45Arg)Likely pathogenic
Meckel-Gruber syndrome
β˜†β˜†β˜†β˜†β†’ Residue 45
View on ClinVar β†—
Related Genes
CIBAR2Shared pathway100%CFAP184Shared pathway100%HYLS1Shared pathway100%LRRC45Shared pathway100%WDR90Shared pathway100%PTPDC1Shared pathway100%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
88%
Lung
75%
Liver
72%
Heart
28%
Brain
16%
Gene Interaction Network
Click a node to explore
TMEM138CIBAR2CFAP184HYLS1LRRC45WDR90PTPDC1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9NPI0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.93LoF Tolerant
pLIβ“˜
0.23Tolerant
Observed/Expected LoF0.44 [0.23–0.93]
RankingsWhere TMEM138 stands among ~20K protein-coding genes
  • #15,147of 20,598
    Most Researched17
  • #2,256of 5,498
    Most Pathogenic Variants19
  • #8,554of 17,882
    Most Constrained (LOEUF)0.93
Genes detectedTMEM138
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301500
1.00
2
TMEM138: From Biological Functions to Diseases.
PMID: 40432436
Physiol Res Β· 2025
0.90
3
Loci associated with skin pigmentation identified in African populations.
PMID: 29025994
Science Β· 2017
0.80
4
Tmem138 is localized to the connecting cilium essential for rhodopsin localization and outer segment biogenesis.
PMID: 35394880
Proc Natl Acad Sci U S A Β· 2022
0.70
5
Skin colour: A window into human phenotypic evolution and environmental adaptation.
PMID: 38713101
Mol Ecol Β· 2024
0.60