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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RPGRIP1L
RPGRIP1 like
Chromosome 16 Β· 16q12.2
NCBI Gene: 23322Ensembl: ENSG00000103494.16HGNC: HGNC:29168UniProt: A0A087WX34
76PubMed Papers
23Diseases
0Drugs
336Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingthromboxane A2 receptor bindingcentrosomecytosolJoubert syndrome with hepatic defectJoubert syndromeMeckel syndromeMeckel syndrome, type 5
✦AI Summary

RPGRIP1L is a ciliary transition zone protein that functions as a negative regulator of thromboxane A2 receptor (TBXA2R) signaling 1 and plays critical roles in ciliary organization and planar cell polarity. The protein localizes to the ciliary basal body and transition zone, where it interacts with nephrocystin proteins (NPHP4 and NPHP6) to regulate apical junction organization 2. RPGRIP1L is essential for proper hypothalamic neuron development, particularly for POMC neuron specification; mutations correlate with increased food intake and obesity through altered arcuate nucleus development 3. Pathogenic RPGRIP1L variants cause severe ciliopathies including Joubert syndrome (JS type B), characterized by cerebellar-brainstem malformations, and often associated with renal involvement (nephronophthisis) and retinal dystrophy requiring close monitoring 45. RPGRIP1L mutations also cause Meckel syndrome and COACH syndrome, demonstrating multi-organ developmental effects 2. Additionally, RPGRIP1L functions as a candidate tumor suppressor gene; its downregulation occurs in 35% of hepatocellular carcinomas, and overexpression suppresses tumor cell colony formation through mitotic checkpoint regulation 6. The T615P missense mutation represents the most common RPGRIP1L disease variant in JS type B patients 5.

Sources cited
1
RPGRIP1L negatively regulates TBXA2R signaling
PMID: 19464661
2
RPGRIP1L localizes to basal body/centrosomes, interacts with NPHP proteins, causes CORS/Meckel syndrome when mutated
PMID: 17558409
3
RPGRIP1L required for hypothalamic POMC neuron development; mutations cause obesity and hyperphagia
PMID: 30728336
4
RPGRIP1L mutations in Joubert syndrome patients frequently associated with renal involvement
PMID: 35238134
5
RPGRIP1L mutations cause Joubert syndrome type B; T615P is most common mutation affecting 8-10% of JS type B patients
PMID: 17960139
6
RPGRIP1L downregulated in hepatocellular carcinoma; functions as tumor suppressor through Mad2-mediated mitotic checkpoint
PMID: 19410446
Disease Associationsβ“˜23
Joubert syndrome with hepatic defectOpen Targets
0.79Strong
Joubert syndromeOpen Targets
0.78Strong
Meckel syndromeOpen Targets
0.77Strong
Meckel syndrome, type 5Open Targets
0.76Strong
Joubert syndrome 7Open Targets
0.72Strong
Joubert syndrome and related disordersOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.50Moderate
ciliopathyOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.44Moderate
eye diseaseOpen Targets
0.37Weak
Joubert syndrome with renal defectOpen Targets
0.37Weak
Abnormality of prenatal development or birthOpen Targets
0.34Weak
bipolar disorderOpen Targets
0.31Weak
DermatochalasisOpen Targets
0.30Weak
anaphylaxisOpen Targets
0.30Weak
VitiligoOpen Targets
0.27Weak
Leber congenital amaurosisOpen Targets
0.27Weak
Bardet-Biedl syndromeOpen Targets
0.27Weak
HypercholesterolemiaOpen Targets
0.24Weak
breast carcinomaOpen Targets
0.21Weak
COACH syndrome 3UniProt
Joubert syndrome 7UniProt
Meckel syndrome 5UniProt
Pathogenic Variants336
NM_015272.5(RPGRIP1L):c.1709dup (p.Asp571fs)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome 7|Joubert syndrome|not provided|Joubert syndrome 7;Meckel syndrome, type 5;COACH syndrome 3|RPGRIP1L-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 571
NM_015272.5(RPGRIP1L):c.2050C>T (p.Gln684Ter)Pathogenic
Joubert syndrome 7|Meckel syndrome, type 5;COACH syndrome 1;Joubert syndrome 7|Joubert syndrome;Meckel-Gruber syndrome|not provided|Joubert syndrome|Abnormality of prenatal development or birth|Meckel syndrome, type 5;Joubert syndrome 7;COACH syndrome 3
β˜…β˜…β˜†β˜†2026β†’ Residue 684
NM_015272.5(RPGRIP1L):c.1372G>T (p.Glu458Ter)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|not provided|Joubert syndrome 7;Meckel syndrome, type 5;COACH syndrome 3|Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 458
NM_015272.5(RPGRIP1L):c.2614C>T (p.Gln872Ter)Pathogenic
Meckel syndrome, type 5|not provided|Meckel syndrome, type 5;COACH syndrome 1;Joubert syndrome 7|Joubert syndrome;Meckel-Gruber syndrome|RPGRIP1L-related disorder|Joubert syndrome|Meckel syndrome, type 5;Joubert syndrome 7;COACH syndrome 3|Meckel-Gruber syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 872
NM_015272.5(RPGRIP1L):c.2565C>A (p.Tyr855Ter)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 855
NM_015272.5(RPGRIP1L):c.1905T>G (p.Tyr635Ter)Pathogenic
not provided|Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 635
NM_015272.5(RPGRIP1L):c.3299_3300dup (p.Ala1101fs)Pathogenic
Joubert syndrome 7|Joubert syndrome;Meckel-Gruber syndrome|COACH syndrome 3;Joubert syndrome 7;Meckel syndrome, type 5|Joubert syndrome and related disorders|RPGRIP1L-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 1101
NM_015272.5(RPGRIP1L):c.231-1G>TPathogenic
Joubert syndrome|Meckel-Gruber syndrome;Joubert syndrome
β˜…β˜…β˜†β˜†2026
NM_015272.5(RPGRIP1L):c.1120del (p.His374fs)Pathogenic
Joubert syndrome|Meckel-Gruber syndrome;Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 374
NM_015272.5(RPGRIP1L):c.2432del (p.Pro811fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|RPGRIP1L-related disorder|Joubert syndrome 7;Meckel syndrome, type 5;COACH syndrome 3|Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 811
NM_015272.5(RPGRIP1L):c.2200C>T (p.Arg734Ter)Pathogenic
not provided|Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome and related disorders|Inborn genetic diseases|Joubert syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 734
NM_015272.5(RPGRIP1L):c.1278del (p.Glu426fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 426
NM_015272.5(RPGRIP1L):c.583A>T (p.Lys195Ter)Pathogenic
not provided|Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome|Joubert syndrome 7;Meckel syndrome, type 5;COACH syndrome 3|RPGRIP1L-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 195
NM_015272.5(RPGRIP1L):c.196C>T (p.Gln66Ter)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome and related disorders|not provided|Joubert syndrome 7;COACH syndrome 3;Meckel syndrome, type 5|RPGRIP1L-related disorder|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 66
NM_015272.5(RPGRIP1L):c.149del (p.Leu50fs)Pathogenic
Joubert syndrome;Meckel-Gruber syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 50
NM_015272.5(RPGRIP1L):c.1243+1G>APathogenic
Joubert syndrome 7|Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2025
NM_015272.5(RPGRIP1L):c.1641dup (p.Val548fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome 7|Meckel syndrome, type 5;Joubert syndrome 7;COACH syndrome 3|ROGRIP1L-related disorder|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 548
NM_015272.5(RPGRIP1L):c.2180G>A (p.Gly727Asp)Likely pathogenic
Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 727
NM_015272.5(RPGRIP1L):c.2125C>T (p.Arg709Ter)Pathogenic
not provided|Meckel-Gruber syndrome;Joubert syndrome|Joubert syndrome 7;Meckel syndrome, type 5;COACH syndrome 3|RPGRIP1L-related disorder|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 709
NM_015272.5(RPGRIP1L):c.1072_1073dup (p.Leu358fs)Pathogenic
Meckel-Gruber syndrome;Joubert syndrome|RPGRIP1L-related disorder|Joubert syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 358
View on ClinVar β†—
Related Genes
WDR19Protein interaction100%B9D1Protein interaction100%TCTN1Protein interaction100%TMEM231Protein interaction100%TCTN2Protein interaction99%MKS1Protein interaction97%
Tissue Expression6 tissues
Brain
100%
Ovary
51%
Bone Marrow
36%
Heart
29%
Lung
19%
Liver
12%
Gene Interaction Network
Click a node to explore
RPGRIP1LWDR19B9D1TCTN1TMEM231TCTN2MKS1
PROTEIN STRUCTURE
Preparing viewer…
PDB2YRB Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.91LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.64–0.91]
RankingsWhere RPGRIP1L stands among ~20K protein-coding genes
  • #6,283of 20,598
    Most Researched76
  • #176of 5,498
    Most Pathogenic Variants336 Β· top 5%
  • #8,240of 17,882
    Most Constrained (LOEUF)0.91
Genes detectedRPGRIP1L
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genotype-phenotype correlates in Joubert syndrome: A review.
PMID: 35238134
Am J Med Genet C Semin Med Genet Β· 2022
1.00
2
PMID: 27336129
0.90
3
PMID: 20301500
0.80
4
The ciliary protein Rpgrip1l in development and disease.
PMID: 30075108
Dev Biol Β· 2018
0.70
5
Mutational analysis of the RPGRIP1L gene in patients with Joubert syndrome and nephronophthisis.
PMID: 17960139
Kidney Int Β· 2007
0.60