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GeneE
7 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MRPL39
mitochondrial ribosomal protein L39
Chromosome 21 Β· 21q21.3
NCBI Gene: 54148Ensembl: ENSG00000154719.15HGNC: HGNC:14027UniProt: Q9NYK5
91PubMed Papers
21Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrionRNA bindingmitochondrial large ribosomal subunitmitochondrial inner membranecombined oxidative phosphorylation deficiency 59mitochondrial diseaseneurodegenerative diseaseLeigh syndrome
✦AI Summary

MRPL39 is a mitochondrial ribosomal protein that comprises one of 52 proteins in the large subunit of the mitochondrial ribosome (mitoribosome) 1. As a core component of the mitoribosome, MRPL39 participates in synthesizing the 13 subunits of the mitochondrial oxidative phosphorylation (OXPHOS) system encoded by mitochondrial DNA 1. The protein is essential for proper mitoribosomal assembly, with structural studies indicating its involvement in late-stage biogenesis through RNA-protein interactions 2. Pathogenic biallelic variants in MRPL39 cause combined oxidative phosphorylation deficiency 59, manifesting as pediatric-onset mitochondrial disease with variable severity, ranging from lethal infantile-onset Leigh syndrome to milder forms with adult survival 1. Disease variants impair large mitoribosomal subunit stability and function, reducing OXPHOS complex abundance 1. Quantitative proteomics effectively identifies these defects, offering diagnostic utility for exome-unsolved mitochondrial disease patients 1. Clinically, MRPL39 dysfunction requires early recognition in critically ill infants presenting with multisystem disease, as ultrarapid genomic diagnosis can guide management decisions including potential palliative care redirection 3. Beyond inherited mitochondrial disease, an lncRNA designated lnc-MRPL39-2:1 has been implicated in nasopharyngeal carcinoma tumorigenesis through HuR-mediated stabilization of Ξ²-catenin mRNA 4, highlighting potential pleiotropic effects of MRPL39-derived transcripts in cancer biology.

Sources cited
1
MRPL39 encodes a mitoribosomal large subunit protein; biallelic variants cause mitochondrial disease with variable severity; proteomics identifies large subunit instability as disease mechanism
PMID: 37133451
2
MRPL39 is a mitoribosomal protein involved in late-stage mitoribosomal assembly through RNA-protein remodeling
PMID: 24206665
3
MRPL39 variants cause mitochondrial disease in critically ill infants; ultrarapid genomic diagnosis guides clinical management
PMID: 39417332
4
A long non-coding RNA lnc-MRPL39-2:1 promotes nasopharyngeal carcinoma growth and invasion via HuR-mediated Ξ²-catenin stabilization
PMID: 37215987
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
combined oxidative phosphorylation deficiency 59Open Targets
0.58Moderate
mitochondrial diseaseOpen Targets
0.48Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
Leigh syndromeOpen Targets
0.36Weak
hair colorOpen Targets
0.12Weak
obesityOpen Targets
0.10Suggestive
Abnormal nasolacrimal system morphologyOpen Targets
0.09Suggestive
Phenotypic abnormalityOpen Targets
0.08Suggestive
liver diseaseOpen Targets
0.08Suggestive
nasopharyngeal carcinomaOpen Targets
0.08Suggestive
Hashimoto's thyroiditisOpen Targets
0.08Suggestive
ovarian dysfunctionOpen Targets
0.08Suggestive
rheumatoid arthritisOpen Targets
0.07Suggestive
overnutritionOpen Targets
0.07Suggestive
sialolithiasisOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.06Suggestive
Familial progressive cardiac conduction defectOpen Targets
0.05Suggestive
Brugada syndromeOpen Targets
0.05Suggestive
Romano-Ward syndromeOpen Targets
0.04Suggestive
lymphatic system diseaseOpen Targets
0.04Suggestive
Combined oxidative phosphorylation deficiency 59UniProt
Pathogenic Variants4
NM_017446.4(MRPL39):c.119T>A (p.Leu40Ter)Likely pathogenic
Mitochondrial disease
β˜…β˜†β˜†β˜†2023β†’ Residue 40
NM_017446.4(MRPL39):c.589-924G>APathogenic
Leigh syndrome|Combined oxidative phosphorylation deficiency 59|Mitochondrial disease
β˜…β˜†β˜†β˜†2023
NM_017446.4(MRPL39):c.896G>T (p.Gly299Val)Likely pathogenic
Mitochondrial disease|Combined oxidative phosphorylation deficiency 59
β˜…β˜†β˜†β˜†2021β†’ Residue 299
NM_017446.4(MRPL39):c.921+5G>APathogenic
Leigh syndrome|Combined oxidative phosphorylation deficiency 59
β˜†β˜†β˜†β˜†2023
View on ClinVar β†—
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
Preparing viewer…
PDB7OF0 Β· 2.20 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.18LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.88 [0.67–1.18]
RankingsWhere MRPL39 stands among ~20K protein-coding genes
  • #5,255of 20,598
    Most Researched91
  • #3,753of 5,498
    Most Pathogenic Variants4
  • #12,339of 17,882
    Most Constrained (LOEUF)1.18
Genes detectedMRPL39
Sources retrieved7 papers
Response timeβ€”
πŸ“„ Sources
7β–Ό
1
Upregulated Long Non-coding RNA Lnc-MRPL39-2:1 Induces the Growth and Invasion of Nasopharyngeal Carcinoma by Binding to HuR and Stabilizing Ξ²-Catenin mRNA.
PMID: 37215987
Int J Biol Sci Β· 2023
1.00
2
Multi-omics identifies large mitoribosomal subunit instability caused by pathogenic MRPL39 variants as a cause of pediatric onset mitochondrial disease.
PMID: 37133451
Hum Mol Genet Β· 2023
0.86
3
MRPL15 is a novel prognostic biomarker and therapeutic target for epithelial ovarian cancer.
PMID: 33934540
Cancer Med Β· 2021
0.71
4
Long Noncoding RNA MRPL39 Inhibits Gastric Cancer Proliferation and Progression by Directly Targeting miR-130.
PMID: 30452299
Genet Test Mol Biomarkers Β· 2018
0.57
5
The DEAD box protein Mrh4 functions in the assembly of the mitochondrial large ribosomal subunit.
PMID: 24206665
Cell Metab Β· 2013
0.43