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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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MSI1
musashi RNA binding protein 1
Chromosome 12 · 12q24.31
NCBI Gene: 4440Ensembl: ENSG00000135097.8HGNC: HGNC:7330UniProt: O43347
156PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingRNA bindingidentical protein bindingcentral nervous system developmentneurodegenerative diseaseneoplasmglioblastoma multiformelung cancer
✦AI Summary

MSI1 (musashi RNA binding protein 1) is an RNA-binding protein that regulates target mRNA expression primarily through translational control. MSI1 binds specific RNA sequences including the pattern 5'-[GA]U(1-3)AGU-3' and directly interacts with 3' untranslated regions of target mRNAs to modulate their translation efficiency 12. MSI1 plays critical roles in stem cell biology across multiple tissues. In intestinal stem cells, MSI1 expression is maintained during fatty acid oxidation-dependent renewal 3. In embryonic stem cells, MSI1 and its short C-terminal variants regulate pluripotency states and early embryonic development, with roles in DNA-damage repair 4. MSI1 also promotes pro-neural reprogramming, primarily inducing switches toward early stem-like cells 5. Clinically, MSI1 dysregulation associates with multiple malignancies. MSI1 is highly expressed in osteosarcoma, where knockdown inhibits proliferation via p21/p27 upregulation 2. In breast cancer, MSI1 mediates alternative splicing of ALDOA to promote tamoxifen resistance through enhanced translation and mTOR pathway activation 1. MSI1 and HER2 co-expression correlate with unfavorable prognosis in mammary Paget's disease 6. In glioma, cytoplasmic MSI1 promotes angiogenesis and correlates with tumor grade 7. Additionally, ZIKV neurotropism involves MSI1-mediated mechanisms relevant to Alzheimer's disease pathogenesis 8.

Sources cited
1
MSI1 mediates ALDOA alternative splicing to enhance translation efficiency and promote tamoxifen resistance in breast cancer
PMID: 39164523
2
MSI1 binds p21 and p27 mRNA 3' UTRs; MSI1 knockdown inhibits osteosarcoma cell proliferation
PMID: 29113163
3
MSI1 and its C-terminal variants regulate pluripotency states in embryonic stem cells and bind DNA-damage repair RNAs
PMID: 37858462
4
MSI1 expression is maintained in intestinal stem cells during fatty acid oxidation-dependent renewal
PMID: 31759926
5
MSI1 induces pro-neural reprogramming with switches toward early stem-like cells in human fibroblasts
PMID: 39596450
6
Cytoplasmic MSI1 promotes angiogenesis in glioma; expression pattern correlates with tumor grade
PMID: 23017339
7
MSI1 and HER2 are highly co-expressed in mammary Paget's disease and correlate with unfavorable prognosis
PMID: 37527989
8
ZIKV neurotropism involves MSI1-mediated mechanisms relevant to Alzheimer's disease pathogenesis
PMID: 38535583
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.56Moderate
neoplasmOpen Targets
0.12Weak
glioblastoma multiformeOpen Targets
0.11Weak
lung cancerOpen Targets
0.10Suggestive
cervical cancerOpen Targets
0.09Suggestive
gastric cancerOpen Targets
0.09Suggestive
cancerOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
Mobius syndromeOpen Targets
0.09Suggestive
esophageal squamous cell carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
oral squamous cell carcinomaOpen Targets
0.08Suggestive
glioblastomaOpen Targets
0.08Suggestive
lumbar disc herniationOpen Targets
0.08Suggestive
Palmar FibromatosisOpen Targets
0.08Suggestive
osteosarcomaOpen Targets
0.08Suggestive
skin basal cell carcinomaOpen Targets
0.07Suggestive
retinitis pigmentosaOpen Targets
0.07Suggestive
gliomaOpen Targets
0.07Suggestive
fibroblastic disorderOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NUMBProtein interaction96%DAZAP1Protein interaction91%ZC3H14Protein interaction83%ROBO3Protein interaction82%SOX2Protein interaction80%NUMBLProtein interaction80%
Tissue Expression6 tissues
Brain
100%
Heart
20%
Ovary
8%
Liver
1%
Lung
1%
Bone Marrow
1%
Gene Interaction Network
Click a node to explore
MSI1NUMBDAZAP1ZC3H14ROBO3SOX2NUMBL
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O43347
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.52Moderately Constrained
pLIⓘ
0.95Intolerant
Observed/Expected LoF0.34 [0.23–0.52]
RankingsWhere MSI1 stands among ~20K protein-coding genes
  • #2,891of 20,598
    Most Researched156 · top quartile
  • #3,252of 17,882
    Most Constrained (LOEUF)0.52 · top quartile
Genes detectedMSI1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
HNF4 Regulates Fatty Acid Oxidation and Is Required for Renewal of Intestinal Stem Cells in Mice.
PMID: 31759926
Gastroenterology · 2020
1.00
2
Alternative splicing of ALDOA confers tamoxifen resistance in breast cancer.
PMID: 39164523
Oncogene · 2024
0.90
3
The oncogene Musashi1 encodes novel miRNAs in breast cancer.
PMID: 37607966
Sci Rep · 2023
0.88
4
Manipulating Zika virus RNA tertiary structure for developing tissue-specific attenuated vaccines.
PMID: 40926050
EMBO Mol Med · 2025
0.80
5
[Expression of MSI1 and HER2 in mammary Paget's disease and their correlation with clinicopathological features and prognosis].
PMID: 37527989
Zhonghua Bing Li Xue Za Zhi · 2023
0.80