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GeneE
28 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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MSI2
musashi RNA binding protein 2
Chromosome 17 · 17q22
NCBI Gene: 124540Ensembl: ENSG00000153944.12HGNC: HGNC:18585UniProt: B4DHE8
164PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingRNA bindingidentical protein bindingcytosolAbnormality of the skeletal systemneurodegenerative diseasealcohol drinkingopen-angle glaucoma
✦AI Summary

MSI2 is an RNA-binding protein that regulates target mRNA expression at the translational level 1. In hematopoietic stem cells (HSCs), MSI2 maintains primitive cell fate by balancing self-renewal and differentiation, partly through Notch signaling regulation 2. MSI2 stabilizes specific mRNAs, including c-Myc and BCAT1, through recognition of N6-methyladenosine modifications 13. Genetically, a protective regulatory variant (rs17834140-T) that down-regulates MSI2 in HSCs confers resilience against clonal hematopoiesis and myeloid malignancies 4. Clinically, MSI2 overexpression is associated with poor prognosis across multiple malignancies, correlating with unfavorable overall survival (HR=1.85) and disease-free survival (HR=2.19) 5. MSI2 drives therapy resistance in gastric cancer through c-Myc stabilization 1 and in B-cell lymphoma through synergy with PRMT5 activity 6. Beyond cancer, MSI2 overexpression enhances muscle dysfunction in myotonic dystrophy type 1 through an autophagy axis 7. Genetic evidence links MSI2 variants to schizophrenia susceptibility, suggesting roles in neurogenesis 8. MSI2 inhibition represents a rational therapeutic strategy for preventing blood cancer progression and reversing chemoresistance.

Sources cited
1
rs17834140-T variant protects against clonal hematopoiesis by down-regulating MSI2 in HSCs; MSI2 levels modify ASXL1-mutant HSC clonal dominance
PMID: 41477881
2
MSI2 stabilizes c-Myc mRNA in an m6A-dependent manner; MSI2-c-Myc axis drives chemoresistance in gastric cancer
PMID: 35073459
3
High MSI2 expression predicts unfavorable overall survival (HR=1.85) and disease-free/recurrence-free survival (HR=2.19) across 2203 patients with malignancies
PMID: 36596017
4
MSI2 drives resistance to PRMT5 inhibition in B-cell lymphoma; dual MSI2 and PRMT5 inhibition synergistically blocks c-MYC and BCL-2 translation
PMID: 36167829
5
MSI2 overexpression promotes muscle dysfunction in myotonic dystrophy type 1 through a miR-7-autophagy axis
PMID: 37797921
6
MSI2 is an upstream regulator of BCAT1; MSI2-BCAT1 axis drives cancer progression in myeloid leukemia through BCAA metabolism
PMID: 28514443
7
MSI2 genetic variants (rs9892791, rs11657292, rs1822381) are associated with schizophrenia susceptibility in Chinese Han population
PMID: 27059221
8
MSI2 is essential for HSC maintenance through balancing self-renewal and differentiation; overexpression contributes to myeloid leukemia progression
PMID: 21577104
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.47Moderate
neurodegenerative diseaseOpen Targets
0.44Moderate
alcohol drinkingOpen Targets
0.41Moderate
open-angle glaucomaOpen Targets
0.38Weak
clonal hematopoiesisOpen Targets
0.38Weak
papillary thyroid carcinomaOpen Targets
0.37Weak
gastric carcinomaOpen Targets
0.37Weak
prostate adenocarcinomaOpen Targets
0.37Weak
pancreatic ductal adenocarcinomaOpen Targets
0.37Weak
kidney neoplasmOpen Targets
0.37Weak
lymphoid neoplasmOpen Targets
0.37Weak
bile duct carcinomaOpen Targets
0.37Weak
breast ductal adenocarcinomaOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
esophageal adenocarcinomaOpen Targets
0.37Weak
Hepatobiliary NeoplasmOpen Targets
0.37Weak
Ovarian Endometrioid Adenocarcinoma with Squamous DifferentiationOpen Targets
0.37Weak
pancreatic carcinomaOpen Targets
0.37Weak
pancreatic neuroendocrine tumorOpen Targets
0.37Weak
skin carcinomaOpen Targets
0.37Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NUMBProtein interaction95%NUMBLProtein interaction95%HOXA9Protein interaction92%DAZAP1Protein interaction91%ZC3H14Protein interaction91%NUP98Protein interaction86%
Tissue Expression6 tissues
Ovary
100%
Brain
88%
Heart
75%
Bone Marrow
51%
Liver
17%
Lung
16%
Gene Interaction Network
Click a node to explore
MSI2NUMBNUMBLHOXA9DAZAP1ZC3H14NUP98
PROTEIN STRUCTURE
Preparing viewer…
PDB6DBP · 1.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.65LoF Tolerant
pLIⓘ
0.33Tolerant
Observed/Expected LoF0.41 [0.26–0.65]
RankingsWhere MSI2 stands among ~20K protein-coding genes
  • #2,733of 20,598
    Most Researched164 · top quartile
  • #4,665of 17,882
    Most Constrained (LOEUF)0.65
Genes detectedMSI2
Sources retrieved28 papers
Response time—
📄 Sources
28▼
1
Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation.
PMID: 41477881
Science · 2026
1.00
2
LncRNA LINC00942 promotes chemoresistance in gastric cancer by suppressing MSI2 degradation to enhance c-Myc mRNA stability.
PMID: 35073459
Clin Transl Med · 2022
0.90
3
Msi2-mediated MiR7a-1 processing repression promotes myogenesis.
PMID: 34877814
J Cachexia Sarcopenia Muscle · 2022
0.88
4
Inherited resilience to clonal hematopoiesis by modifying stem cell RNA regulation.
PMID: 40196615
bioRxiv · 2025
0.80
5
TP53 mutations and RNA-binding protein MUSASHI-2 drive resistance to PRMT5-targeted therapy in B-cell lymphoma.
PMID: 36167829
Nat Commun · 2022
0.80