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22 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NCBP1
nuclear cap binding protein subunit 1
Chromosome 9 · 9q22.33
NCBI Gene: 4686Ensembl: ENSG00000136937.14HGNC: HGNC:7658UniProt: Q09161
238PubMed Papers
20Diseases
1Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneTransporter
RESEARCH IMPACT
Trending
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of mRNA splicing, via spliceosomemRNA transcription by RNA polymerase IIRNA bindingRNA 7-methylguanosine cap bindingHIV infectionneurodegenerative diseasehypothyroidismacrocephalosyndactyly
✦AI Summary

NCBP1 (nuclear cap binding protein subunit 1) is an essential component of the nuclear cap-binding complex (CBC) that binds to the 5'-methylguanosine cap of RNA polymerase II transcripts 1. NCBP1 is required for cell viability and functions in mRNA export by forming complexes with either NCBP2 (conventional CBC) or NCBP3 (alternative CBC) 2. The CBC-ALYREF structure reveals that NCBP1 directly contacts ALYREF to facilitate mRNA export through recruitment of the TREX complex 1. NCBP1 works with NCBP3 to interact with Exon Junction Complex and TREX components, supporting mRNA biogenesis and nuclear export of polyadenylated RNAs 3. Disease relevance includes significant overexpression in multiple cancers: NCBP1 promotes lung adenocarcinoma progression through CUL4B upregulation 4, enhances diffuse large B-cell lymphoma proliferation via METTL3-mediated m6A modification of c-Myc 5, and serves as a prognostic biomarker in breast cancer and sarcoma 67. NCBP1 also participates in meiotic silencing mechanisms in fungi through interaction with RNAi machinery 8. Clinically, NCBP1 represents a potential therapeutic target due to its essential role in mRNA metabolism and oncogenic functions across various cancer types.

Sources cited
1
NCBP1 is a component of CBC that binds 5'-methylguanosine cap and directly contacts ALYREF for mRNA export
PMID: 39282949
2
NCBP1 is required for cell viability and forms alternative CBC with NCBP3 for mRNA export
PMID: 26382858
3
NCBP1-NCBP3 complex interacts with EJC and TREX components to support mRNA biogenesis
PMID: 32960271
4
NCBP1 promotes lung adenocarcinoma progression through CUL4B upregulation
PMID: 31448526
5
NCBP1 enhances DLBCL proliferation via METTL3-mediated m6A modification of c-Myc
PMID: 37244946
6
NCBP1 serves as a prognostic biomarker in breast cancer
PMID: 38071502
7
NCBP1 identified as prognostic gene for sarcoma associated with m7G methylation
PMID: 36816047
8
NCBP1 participates in meiotic silencing mechanisms through RNAi machinery interaction
PMID: 32291289
Disease Associationsⓘ20
HIV infectionOpen Targets
0.59Moderate
neurodegenerative diseaseOpen Targets
0.54Moderate
hypothyroidismOpen Targets
0.41Moderate
acrocephalosyndactylyOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
ulcerative colitisOpen Targets
0.37Weak
Chronic Obstructive AsthmaOpen Targets
0.33Weak
diabetes mellitusOpen Targets
0.32Weak
hypertrophic cardiomyopathyOpen Targets
0.27Weak
Crohn's diseaseOpen Targets
0.20Weak
brain aneurysmOpen Targets
0.12Weak
multinodular goiterOpen Targets
0.10Weak
nontoxic goiterOpen Targets
0.10Weak
COVID-19Open Targets
0.09Suggestive
rheumatoid arthritisOpen Targets
0.09Suggestive
lung cancerOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
diffuse large B-cell lymphomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
Gorham-Stout diseaseOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets1
OBEFAZIMODPhase III
Cap binding complex modulator
ulcerative colitis
Related Genes
CDC40Protein interaction100%EFTUD2Protein interaction100%PRPF8Protein interaction100%SNRPA1Protein interaction100%SART1Protein interaction100%NELFCDProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
87%
Heart
56%
Liver
48%
Ovary
47%
Lung
41%
Gene Interaction Network
Click a node to explore
NCBP1CDC40EFTUD2PRPF8SNRPA1SART1NELFCD
PROTEIN STRUCTURE
Preparing viewer…
PDB1H2V · 2.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.20Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.11 [0.07–0.20]
RankingsWhere NCBP1 stands among ~20K protein-coding genes
  • #1,654of 20,598
    Most Researched238 · top 10%
  • #466of 17,882
    Most Constrained (LOEUF)0.20 · top 5%
Genes detectedNCBP1
Sources retrieved22 papers
Response time—
📄 Sources
22▼
1
Identification and validation of N
PMID: 38071502
J Cell Mol Med · 2024
1.00
2
NCBP3 positively impacts mRNA biogenesis.
PMID: 32960271
Nucleic Acids Res · 2020
0.90
3
NCBP1 enhanced proliferation of DLBCL cells via METTL3-mediated m6A modification of c-Myc.
PMID: 37244946
Sci Rep · 2023
0.80
4
NCBP1 promotes the development of lung adenocarcinoma through up-regulation of CUL4B.
PMID: 31448526
J Cell Mol Med · 2019
0.70
5
Cryo-EM structure of the CBC-ALYREF complex.
PMID: 39282949
Elife · 2024
0.60