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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NUP42
nucleoporin 42
Chromosome 7 · 7p15.3
NCBI Gene: 11097Ensembl: ENSG00000136243.19HGNC: HGNC:17010UniProt: O15504
68PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmRNA bindingnuclear export signal receptor activityprotein bindinginfluenzaHIV infectionviral diseaseCOVID-19
✦AI Summary

NUP42 (nucleoporin 42) is a nuclear pore complex (NPC) component that plays a critical role in mRNA export and nucleocytoplasmic transport. Its primary function is to facilitate the activation of the DEAD-box helicase DDX19 (Dbp5 in yeast) through interaction with Gle1, enabling removal of mRNA export factors from exported mRNAs 1. The Nup42 carboxy-terminal domain binds Gle1 at a distinct interface from the Gle1-DDX19 interaction site, and this high-affinity interaction is integral to efficient mRNA export 2. NUP42 also participates in Crm1-mediated nuclear protein export, selectively interacting with export complexes 3, and associates with the Smt3-specific protease Ulp1 at the nuclear pore 4. Clinically, NUP42 dysfunction has implications for neurological disease. Mutations affecting the Nup42-Gle1 interaction cause decreased Gle1 thermostability and have been linked to motor neuron diseases 1. Additionally, genome-wide association studies using dopaminergic neuron-specific expression quantitative trait loci nominated NUP42 as a potential causal gene for Parkinson's disease 5. During coronavirus infection, NUP42 undergoes cytoplasmic dispersion and structural alterations that disrupt nucleocytoplasmic trafficking and suppress antiviral immune responses 6.

Sources cited
1
NUP42 activates DDX19 helicase with Gle1 to remove mRNA export factors; mutations linked to motor neuron diseases
PMID: 29899397
2
NUP42 C-terminal domain binds Gle1 and is integral to DDX19 activation and mRNA export
PMID: 28869701
3
NUP42 selectively interacts with Crm1-mediated nuclear export complexes
PMID: 10347184
4
NUP42 associates with Ulp1 protease at the nuclear pore complex
PMID: 11056382
5
NUP42 nominated as potential causal gene for Parkinson's disease via Mendelian randomization
PMID: 36177513
6
NUP42 undergoes cytoplasmic dispersion and structural changes during coronavirus infection, disrupting nucleocytoplasmic trafficking
PMID: 39602452
Disease Associationsⓘ20
influenzaOpen Targets
0.54Moderate
HIV infectionOpen Targets
0.54Moderate
viral diseaseOpen Targets
0.53Moderate
COVID-19Open Targets
0.37Weak
HistiocytosisOpen Targets
0.37Weak
Parkinson diseaseOpen Targets
0.23Weak
liver diseaseOpen Targets
0.11Weak
neoplasmOpen Targets
0.08Suggestive
chronic kidney diseaseOpen Targets
0.07Suggestive
temporomandibular joint disorderOpen Targets
0.06Suggestive
rosaceaOpen Targets
0.06Suggestive
AnxietyOpen Targets
0.04Suggestive
papillary thyroid carcinomaOpen Targets
0.03Suggestive
amyotrophic lateral sclerosisOpen Targets
0.03Suggestive
post-traumatic stress disorderOpen Targets
0.03Suggestive
acute kidney injuryOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
lymphomaOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.01Suggestive
drug dependenceOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NXF3Protein interaction100%NDC1Protein interaction99%SEH1LProtein interaction99%NUP35Protein interaction99%NUP205Protein interaction99%NUP85Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
86%
Ovary
78%
Heart
72%
Brain
62%
Lung
59%
Gene Interaction Network
Click a node to explore
NUP42NXF3NDC1SEH1LNUP35NUP205NUP85
PROTEIN STRUCTURE
Preparing viewer…
PDB6B4F · 2.81 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.53LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.07 [0.76–1.53]
RankingsWhere NUP42 stands among ~20K protein-coding genes
  • #6,925of 20,598
    Most Researched68
  • #15,315of 17,882
    Most Constrained (LOEUF)1.53
Genes detectedNUP42
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Structural and functional analysis of mRNA export regulation by the nuclear pore complex.
PMID: 29899397
Nat Commun · 2018
1.00
2
Coronavirus nucleocapsid protein enhances the binding of p-PKCα to RACK1: Implications for inhibition of nucleocytoplasmic trafficking and suppression of the innate immune response.
PMID: 39602452
PLoS Pathog · 2024
0.90
3
Nup42 and IP
PMID: 28869701
Traffic · 2017
0.80
4
Correction to: Nup42 and IP
PMID: 29999599
Traffic · 2018
0.70
5
Mendelian Randomization Study Using Dopaminergic Neuron-Specific eQTL Nominates Potential Causal Genes for Parkinson's Disease.
PMID: 36177513
Mov Disord · 2022
0.60