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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PCGF6
polycomb group ring finger 6
Chromosome 10 · 10q24.33
NCBI Gene: 84108Ensembl: ENSG00000156374.17HGNC: HGNC:21156UniProt: Q9BYE7
81PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingchromatin remodelingPcG protein complexnucleusneurodegenerative diseaseinsomniatype 2 diabetes mellitusdiabetic neuropathy
✦AI Summary

PCGF6 (polycomb group ring finger 6) is a multifunctional transcriptional regulator that serves as a core component of PRC1-like complexes, which maintain transcriptionally repressive chr10 states through histone H2A lysine-119 monoubiquitination 1. PCGF6 regulates RNF2 ubiquitin ligase activity within PRC1 complexes and modulates histone H3K4 methylation levels by activating the KDM5D histone demethylase 2. Notably, PCGF6 exhibits context-dependent functions: in embryonic stem cells, it acts as a positive regulator maintaining pluripotency by activating Oct4, Sox2, and Nanog expression 3, while in somatic differentiation, it activates SOX2 expression to promote neuroectoderm specification through interaction with MYC 4. In genomic targeting, PCGF6 associates with MGA, L3MBTL2, and E2F6 in the non-canonical PRC1.6 complex, with MGA serving as the primary recruiter to specific loci 5. Clinically, PCGF6 dysregulation associates with disease progression: elevated PCGF6 in papillary renal cell carcinoma promotes proliferation through the MAZ/CDK4 axis via promoter hypomethylation 6, and altered PCGF6 methylation profiles occur in prostate cancer cells treated with androgens 7. PCGF6 also regulates male germ cell differentiation 8, demonstrating its broad developmental significance.

Sources cited
1
PCGF6 is a transcriptional repressor and component of PRC1 complex mediating histone H2A K119 monoubiquitination
PMID: 12167161
2
PCGF6 modulates H3K4Me3 levels by activating KDM5D histone demethylase
PMID: 17320162
3
PCGF6 regulates RNF2 ubiquitin ligase activity within PRC1-like complexes
PMID: 26151332
4
PCGF6 maintains embryonic stem cell identity by positively regulating Oct4, Sox2, Nanog, and Lin28 expression
PMID: 27247273
5
PCGF6 controls neuroectoderm specification by activating SOX2 through interaction with MYC at distal regulatory elements
PMID: 35933409
6
PCGF6 is a component of non-canonical PRC1.6 complex with MGA serving as primary recruiter to genomic loci
PMID: 29381691
7
Elevated PCGF6 in papillary renal cell carcinoma promotes progression through MAZ/CDK4 axis via promoter hypomethylation
PMID: 36890610
8
PCGF6 shows altered methylation profiles in androgen-treated prostate cancer cells
PMID: 32366400
9
PCGF6 regulates male germ cell differentiation and development
PMID: 25591775
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.36Weak
insomniaOpen Targets
0.17Weak
type 2 diabetes mellitusOpen Targets
0.11Weak
diabetic neuropathyOpen Targets
0.10Weak
diabetes mellitusOpen Targets
0.09Suggestive
sleep apneaOpen Targets
0.08Suggestive
metatropic dysplasiaOpen Targets
0.04Suggestive
schneckenbecken dysplasiaOpen Targets
0.03Suggestive
autosomal dominant spondylocostal dysostosisOpen Targets
0.03Suggestive
spondylometaphyseal dysplasia, A4 typeOpen Targets
0.03Suggestive
spondylocostal dysostosis 5Open Targets
0.03Suggestive
Metaphyseal chondrodysplasia, Schmid typeOpen Targets
0.03Suggestive
Schmid metaphyseal chondrodysplasiaOpen Targets
0.03Suggestive
Dyggve-Melchior-Clausen diseaseOpen Targets
0.03Suggestive
spondylocostal dysostosis 4, autosomal recessiveOpen Targets
0.03Suggestive
autosomal recessive spondylocostal dysostosisOpen Targets
0.03Suggestive
spondylocostal dysostosis 1, autosomal recessiveOpen Targets
0.03Suggestive
dyslexiaOpen Targets
0.02Suggestive
sialolithiasisOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
AUTS2Protein interaction100%FBRSProtein interaction100%E2F6Protein interaction100%MAXProtein interaction100%TFDP1Protein interaction100%TFDP2Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
79%
Heart
63%
Ovary
61%
Bone Marrow
60%
Lung
51%
Gene Interaction Network
Click a node to explore
PCGF6AUTS2FBRSE2F6MAXTFDP1TFDP2
PROTEIN STRUCTURE
Preparing viewer…
PDB2DJB · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.01LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.67 [0.46–1.01]
RankingsWhere PCGF6 stands among ~20K protein-coding genes
  • #5,882of 20,598
    Most Researched81
  • #9,862of 17,882
    Most Constrained (LOEUF)1.01
Genes detectedPCGF6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PCGF6/MAX/KDM5D facilitates MAZ/CDK4 axis expression and pRCC progression by hypomethylation of the DNA promoter.
PMID: 36890610
Epigenetics Chromatin · 2023
1.00
2
PCGF6 controls neuroectoderm specification of human pluripotent stem cells by activating SOX2 expression.
PMID: 35933409
Nat Commun · 2022
0.90
3
Biological functions of chromobox (CBX) proteins in stem cell self-renewal, lineage-commitment, cancer and development.
PMID: 32979540
Bone · 2021
0.80
4
Knockdown of polycomb-group RING finger 6 modulates mouse male germ cell differentiation in vitro.
PMID: 25591775
Cell Physiol Biochem · 2015
0.70
5
MGA, L3MBTL2 and E2F6 determine genomic binding of the non-canonical Polycomb repressive complex PRC1.6.
PMID: 29381691
PLoS Genet · 2018
0.60