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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PCK2
phosphoenolpyruvate carboxykinase 2, mitochondrial
Chromosome 14 Β· 14q11.2-q12
NCBI Gene: 5106Ensembl: ENSG00000100889.13HGNC: HGNC:8725UniProt: A0A384MTT2
111PubMed Papers
1Diseases
0Drugs
3Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
phosphoenolpyruvate carboxykinase (GTP) activitymitochondrionmanganese ion bindingprotein serine/threonine kinase activityMitochondrial phosphoenolpyruvate carboxykinase deficiency
✦AI Summary

PCK2 encodes mitochondrial phosphoenolpyruvate carboxykinase (PEPCK-M), a key metabolic enzyme that catalyzes the conversion of oxaloacetate to phosphoenolpyruvate in gluconeogenesis and glyceroneogenesis 1. Beyond its classical metabolic role, PCK2 functions as a serine/threonine kinase that phosphorylates ACSL4 at T679, promoting ferroptosis-associated phospholipid remodeling 2. The enzyme's activity is regulated by lactylation at Lys100, which enhances its kinase function and contributes to hepatic ferroptosis during ischemia-reperfusion injury 3. PCK2 also supports glyconeogenesis from glutamine, lactate, and glycerol in inflammatory macrophages, enabling cellular functions in nutrient-poor environments 4. In cancer, PCK2 promotes tumor progression through multiple mechanisms: it activates TGF-Ξ²/SMAD3 signaling by preventing TRIM67-mediated SMAD3 ubiquitination, enhancing epithelial-to-mesenchymal transition in triple-negative breast cancer 5, and contributes to lenvatinib resistance in hepatocellular carcinoma through metabolic reprogramming 6. Notably, tumor-repopulating cells downregulate PCK2 to evade ferroptosis and maintain therapy resistance 2. Genetic variants in PCK2 are associated with multi-organ fibrosis, and deficiency causes mitochondrial phosphoenolpyruvate carboxykinase deficiency 7.

Sources cited
1
PCK2 catalyzes oxaloacetate to phosphoenolpyruvate conversion in gluconeogenesis and glyceroneogenesis
PMID: 34020084
2
PCK2 functions as serine/threonine kinase phosphorylating ACSL4 to promote ferroptosis and is downregulated in therapy-resistant tumor cells
PMID: 38720107
3
PCK2 is lactylated at Lys100 which enhances kinase activity and contributes to hepatic ferroptosis during ischemia-reperfusion
PMID: 39853940
4
PCK2 supports glyconeogenesis from glutamine, lactate, and glycerol in inflammatory macrophages
PMID: 39424955
5
PCK2 activates TGF-Ξ²/SMAD3 signaling by preventing TRIM67-mediated SMAD3 ubiquitination in triple-negative breast cancer
PMID: 40081967
6
PCK2 contributes to lenvatinib resistance in hepatocellular carcinoma through metabolic reprogramming
PMID: 39450426
7
Genetic variants in PCK2 are associated with multi-organ fibrosis
PMID: 38806679
Disease Associationsβ“˜1
Mitochondrial phosphoenolpyruvate carboxykinase deficiencyUniProt
Pathogenic Variants3
NM_004563.4(PCK2):c.451_452dup (p.Met152fs)Likely pathogenic
not provided
β˜†β˜†β˜†β˜†2016β†’ Residue 152
NM_004563.4(PCK2):c.457del (p.Gln153fs)Likely pathogenic
not provided
β˜†β˜†β˜†β˜†2016β†’ Residue 153
NM_004563.4(PCK2):c.459_460insA (p.Gly154fs)Likely pathogenic
not provided
β˜†β˜†β˜†β˜†2016β†’ Residue 154
View on ClinVar β†—
Related Genes
PCProtein interaction99%MDH2Protein interaction96%ENO1Protein interaction96%ENO3Protein interaction96%PKLRProtein interaction96%ENO2Protein interaction96%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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PCK2PCMDH2ENO1ENO3PKLRENO2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q16822
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.06LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.85 [0.68–1.06]
RankingsWhere PCK2 stands among ~20K protein-coding genes
  • #4,283of 20,598
    Most Researched111 Β· top quartile
  • #3,978of 5,498
    Most Pathogenic Variants3
  • #10,607of 17,882
    Most Constrained (LOEUF)1.06
Genes detectedPCK2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Lactylation-Driven IGF2BP3-Mediated Serine Metabolism Reprogramming and RNA m6A-Modification Promotes Lenvatinib Resistance in HCC.
PMID: 39450426
Adv Sci (Weinh) Β· 2024
1.00
2
Tumor-repopulating cells evade ferroptosis via PCK2-dependent phospholipid remodeling.
PMID: 38720107
Nat Chem Biol Β· 2024
0.90
3
The Lactate-Primed KAT8β€’PCK2 Axis Exacerbates Hepatic Ferroptosis During Ischemia/Reperfusion Injury by Reprogramming OXSM-Dependent Mitochondrial Fatty Acid Synthesis.
PMID: 39853940
Adv Sci (Weinh) Β· 2025
0.80
4
Phosphoenolpyruvate carboxykinase in cell metabolism: Roles and mechanisms beyond gluconeogenesis.
PMID: 34020084
Mol Metab Β· 2021
0.70
5
Plasticity of the mammalian integrated stress response.
PMID: 40140574
Nature Β· 2025
0.60