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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PDXP
pyridoxal phosphatase
Chromosome 22 · 22q13.1
NCBI Gene: 57026Ensembl: ENSG00000241360.2HGNC: HGNC:30259UniProt: A0A024R1I3
38PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
pyridoxal 5'-phosphate catabolic processactin cytoskeletonlamellipodiumpositive regulation of actin filament depolymerizationexperimental autoimmune encephalomyelitisneoplasmmyeloid sarcomainfection
✦AI Summary

PDXP (pyridoxal phosphatase) is a haloacid dehalogenase (HAD)-family phosphatase with dual enzymatic functions in vitamin B6 metabolism and cytoskeletal regulation 1. As a pyridoxal phosphate (PLP) phosphatase, PDXP catalyzes dephosphorylation of PLP, pyridoxine 5'-phosphate (PNP), and pyridoxamine 5'-phosphate (PMP), with substrate preference order PLP > PNP > PMP, thereby controlling bioactive vitamin B6 levels 2. Additionally, PDXP functions as a serine phosphatase that specifically dephosphorylates Ser-3 in actin-depolymerizing factor/cofilin family proteins like CFL1 and DSTN, regulating cofilin-dependent actin cytoskeleton reorganization required for mitosis and cytokinesis 3. Vitamin B6 deficiency links to cognitive impairment, and PDXP activity inversely correlates with age-dependent PLP decline in the hippocampus, establishing PDXP as a druggable therapeutic target 4. Disease relevance includes acute myeloid leukemia (AML), where elevated PDXP expression promotes cell proliferation through the PI3K/AKT/mTOR pathway 5, and endothelial barrier dysfunction, where PDXP downregulation protects against LPS-induced hyper-permeability 3. The discovery of 7,8-dihydroxyflavone as a PDXP inhibitor provides a pharmacological tool for investigating B6-associated neurological pathologies 4.

Sources cited
1
PDXP encodes a pyridoxine 5'-phosphate phosphatase involved in vitamin B6 biosynthesis, belonging to the haloacid dehalogenase superfamily
PMID: 18256491
2
PDXP controls PLP levels and shows age-dependent decline in hippocampus; 7,8-dihydroxyflavone is a direct PDXP inhibitor with potential for treating B6-associated cognitive disorders
PMID: 38856179
3
PDXP is a capped HAD phosphatase with dual roles in metabolite and protein dephosphorylation
PMID: 30030002
4
PDXP is a PLP catabolic enzyme suppressed during prednisolone treatment; prednisolone increases bioactive B6 by inducing synthesis enzymes and suppressing PDXP
PMID: 21205917
5
PDXP upregulation in acute myeloid leukemia promotes cell proliferation and activates PI3K/AKT/mTOR signaling
PMID: 38994801
6
PDXP dephosphorylates cofilin and regulates cytoskeletal function; PDXP silencing blocks LPS-induced endothelial barrier hyper-permeability
PMID: 29363851
Disease Associationsⓘ20
experimental autoimmune encephalomyelitisOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Suggestive
myeloid sarcomaOpen Targets
0.09Suggestive
infectionOpen Targets
0.08Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.07Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
colorectal cancerOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
Persistent Müllerian duct syndromeOpen Targets
0.04Suggestive
frontotemporal dementiaOpen Targets
0.04Suggestive
periodontitisOpen Targets
0.04Suggestive
type 2 diabetes mellitusOpen Targets
0.04Suggestive
hypophosphatasiaOpen Targets
0.04Suggestive
multiple system atrophyOpen Targets
0.04Suggestive
glioblastoma multiformeOpen Targets
0.04Suggestive
Pelizeaus-Merzbacher spectrum disorderOpen Targets
0.03Suggestive
attention deficit hyperactivity disorderOpen Targets
0.03Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.03Suggestive
melanomaOpen Targets
0.03Suggestive
peripheral neuropathyOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PDXKProtein interaction97%PNPOProtein interaction96%AOX1Protein interaction92%PHOSPHO2Protein interaction90%CFL2Protein interaction90%CFL1Protein interaction89%
Tissue Expression6 tissues
Liver
100%
Brain
100%
Ovary
14%
Bone Marrow
14%
Lung
10%
Heart
0%
Gene Interaction Network
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PDXPPDXKPNPOAOX1PHOSPHO2CFL2CFL1
PROTEIN STRUCTURE
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PDB8S8A · 1.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.91LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.45 [0.95–1.91]
RankingsWhere PDXP stands among ~20K protein-coding genes
  • #10,527of 20,598
    Most Researched38
  • #17,337of 17,882
    Most Constrained (LOEUF)1.91
Genes detectedPDXP
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cloning of the pyridoxine 5'-phosphate phosphatase gene (pdxP) and vitamin B6 production in pdxP recombinant Sinorhizobium meliloti.
PMID: 18256491
Biosci Biotechnol Biochem · 2008
1.00
2
7,8-Dihydroxyflavone is a direct inhibitor of human and murine pyridoxal phosphatase.
PMID: 38856179
Elife · 2024
0.90
3
Isolation and characterization of the 5'-flanking region of the human PDXK gene.
PMID: 28716709
Gene · 2017
0.80
4
Lactoferrin Induces the Synthesis of Vitamin B6 and Protects HUVEC Functions by Activating PDXP and the PI3K/AKT/ERK1/2 Pathway.
PMID: 30704032
Int J Mol Sci · 2019
0.70
5
Long-term prednisolone treatments increase bioactive vitamin B6 synthesis in vivo.
PMID: 21205917
J Pharmacol Exp Ther · 2011
0.60