HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
2 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PEX39
peroxisomal biogenesis factor 39
Chromosome 6 Β· 6p21.1
NCBI Gene: 441150Ensembl: ENSG00000221821.4HGNC: HGNC:34431UniProt: Q5I0X4
10PubMed Papers
5Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
peroxisome matrix targeting signal-2 bindingprotein bindingprotein import into peroxisome matrix, dockingcytosolinjurysmoking initiationattention deficit hyperactivity disordersubstance abuse
✦AI Summary

Based on limited published evidence, PEX39 is a cytosolic peroxin that facilitates peroxisomal protein import through the PTS2 (peroxisomal targeting signal-2) pathway. PEX39 binds PEX7 and stabilizes its interaction with PTS2-containing cargo proteins via an (R/K)PWE motif 1. After PTS2 cargo is imported, PEX39 extracts PEX7 from the peroxisomal membrane's YG phase on the cytosolic side and reloads it with new cargo to initiate subsequent import cycles 2. This handover mechanism between PEX39 and the membrane translocon PEX13 represents a novel paradigm for peroxisomal protein biogenesis.

Sources cited
1
PEX39 extracts PEX7 from the peroxisomal YG phase and facilitates PEX7 reloading with cargo for PTS2 import cycling
PMID: 40346349
2
PEX39 is a cytosolic peroxin that binds PEX7 via (R/K)PWE motif and stabilizes PEX7-cargo interaction for PTS2-containing protein import
PMID: 40739340
⚠Limited data available β€” This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜5
injuryOpen Targets
0.03Suggestive
smoking initiationOpen Targets
0.02Suggestive
attention deficit hyperactivity disorderOpen Targets
0.02Suggestive
substance abuseOpen Targets
0.02Suggestive
peroxisomal diseaseOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
PEX7Co-mentioned in literature100%PEX5LShared pathway50%PEX13Shared pathway49%PEX14Shared pathway13%PEX5Shared pathway11%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
98%
Lung
91%
Liver
86%
Ovary
79%
Heart
33%
Gene Interaction Network
Click a node to explore
PEX39PEX7PEX5LPEX13PEX14PEX5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q5I0X4
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.96LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF2.84 [0.73–1.96]
RankingsWhere PEX39 stands among ~20K protein-coding genes
  • #17,142of 20,598
    Most Researched10
  • #17,727of 17,882
    Most Constrained (LOEUF)1.96
Genes detectedPEX39
Sources retrieved2 papers
Response timeβ€”
πŸ“„ Sources
2
1
Import mechanism of peroxisomal proteins with an N-terminal signal sequence.
PMID: 40346349
Nat Cell Biol Β· 2025
1.00
2
PEX39 facilitates the peroxisomal import of PTS2-containing proteins.
PMID: 40739340
Nat Cell Biol Β· 2025
0.50