HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PIP4K2B
phosphatidylinositol-5-phosphate 4-kinase type 2 beta
Chromosome 17 · 17q12
NCBI Gene: 8396Ensembl: ENSG00000276293.6HGNC: HGNC:8998UniProt: P78356
75PubMed Papers
0Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedKinase
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic processpositive regulation of autophagosome assemblyplasma membrane1-phosphatidylinositol-4-phosphate 5-kinase activity
✦AI Summary

PIP4K2B (phosphatidylinositol-5-phosphate 4-kinase type 2 beta) is a stress-regulated lipid kinase that catalyzes the phosphorylation of phosphatidylinositol-5-phosphate (PIP5P) to generate phosphatidylinositol-4,5-bisphosphate [PtdIns(4,5)P2] 1. Unlike other PIP4K isoforms, PIP4K2B localizes predominantly to the nucleus 1 and prefers GTP over ATP as a phosphate donor, with its activity reflecting physiological GTP concentrations—a property critical for metabolic adaptation 2. Mechanistically, PIP4K2B negatively regulates insulin signaling through a catalytic-independent mechanism by binding and suppressing PIP5K activity, thereby reducing insulin-stimulated PI(3,4,5)P3 production 3. PIP4K2B also regulates autophagy and lipid metabolism; deletion of pip4k2a and pip4k2b genes impairs autophagosome clearance and causes lipid accumulation during nutrient stress 4. Additionally, PIP4K2B acts as a mechanoresponsive enzyme that controls nuclear mechanical properties through UHRF1-dependent heterochromatin regulation, affecting YAP signaling and cell motility 5. Clinically, low PIP4K2B expression in breast tumors correlates with reduced E-cadherin expression, enhanced epithelial-to-mesenchymal transition, and poor patient survival 6. High PIP4K2A/2C levels predict resistance to venetoclax in acute myeloid leukemia 7, while anti-PIP4K2B autoantibodies associate with skin and lung fibrosis in systemic sclerosis 8.

Sources cited
1
PIP4K2B preferentially utilizes GTP for PI(5)P phosphorylation with activity reflecting physiological GTP concentration; this GTP-sensing is critical for metabolic adaptation
PMID: 26774281
2
PIP4K2B is a stress-regulated phosphoinositide kinase that generates PtdIns(4,5)P2; predominantly localizes to the nucleus; suppression prevents tumor cell growth and p53-deficient tumor development
PMID: 25728392
3
PIP4Ks suppress insulin signaling through catalytic-independent mechanism by binding and suppressing PIP5K activity, reducing insulin-dependent PI(3,4,5)P3 production
PMID: 31091439
4
Pip4k2a and pip4k2b deletion causes defects in autophagosome clearance and impaired autophagy, leading to lipid accumulation during fasting
PMID: 29727621
5
PIP4K2B is mechanoresponsive; its reduction on soft substrates triggers UHRF1 downregulation and changes in nuclear mechanical properties, impairing YAP signaling and cell motility
PMID: 36918565
6
Low PIP4K2B expression in breast tumors correlates with reduced E-cadherin, enhanced TGF-β-induced EMT, and poor patient survival
PMID: 24127122
7
High PIP4K2A and PIP4K2C expression marks poor prognosis in acute myeloid leukemia and predicts resistance to venetoclax
PMID: 38069220
8
Anti-PIP4K2B autoantibodies are associated with skin and lung fibrosis in systemic sclerosis patients
PMID: 36982700
Pathogenic Variants1
NM_003559.5(PIP4K2B):c.258-548_258-530delLikely pathogenic
Autosomal recessive severe congenital neutropenia due to CSF3R deficiency;Hereditary neutrophilia
★☆☆☆2022
View on ClinVar ↗
Related Genes
PIK3R3Protein interaction100%PIK3R1Protein interaction100%PIK3CBProtein interaction100%PIK3CDProtein interaction100%PIK3CAProtein interaction100%PTENProtein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
PIP4K2BPIK3R3PIK3R1PIK3CBPIK3CDPIK3CAPTEN
PROTEIN STRUCTURE
Preparing viewer…
PDB3X01 · 2.15 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.22Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.07 [0.03–0.22]
RankingsWhere PIP4K2B stands among ~20K protein-coding genes
  • #6,354of 20,598
    Most Researched75
  • #4,981of 5,498
    Most Pathogenic Variants1
  • #597of 17,882
    Most Constrained (LOEUF)0.22 · top 5%
Genes detectedPIP4K2B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Low PIP4K2B expression in human breast tumors correlates with reduced patient survival: A role for PIP4K2B in the regulation of E-cadherin expression.
PMID: 24127122
Cancer Res · 2013
1.00
2
PIP4K2B is mechanoresponsive and controls heterochromatin-driven nuclear softening through UHRF1.
PMID: 36918565
Nat Commun · 2023
0.90
3
Autoantibodies against PIP4K2B and AKT3 Are Associated with Skin and Lung Fibrosis in Patients with Systemic Sclerosis.
PMID: 36982700
Int J Mol Sci · 2023
0.80
4
Pharmacological Inhibition of PIP4K2 Potentiates Venetoclax-Induced Apoptosis in Acute Myeloid Leukemia.
PMID: 38069220
Int J Mol Sci · 2023
0.70
5
Phosphatidylinositol-5-Phosphate 4-Kinases Regulate Cellular Lipid Metabolism By Facilitating Autophagy.
PMID: 29727621
Mol Cell · 2018
0.60