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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PMPCA
peptidase, mitochondrial processing subunit alpha
Chromosome 9 Β· 9q34.3
NCBI Gene: 23203Ensembl: ENSG00000165688.14HGNC: HGNC:18667UniProt: Q10713
90PubMed Papers
21Diseases
0Drugs
12Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrionprotein processingGO:0005615mitochondrial inner membraneautosomal recessive spinocerebellar ataxia 2Autosomal recessive cerebelloparenchymal disorder type 3neurodegenerative diseaseFailure to thrive
✦AI Summary

PMPCA encodes the alpha subunit of mitochondrial processing peptidase (MPP), an essential enzyme responsible for cleaving mitochondrial targeting sequences from newly imported precursor proteins in the mitochondrial matrix 1. This protein processing function is crucial for the maturation of nuclear-encoded mitochondrial proteins necessary for cellular survival 1. Mutations in PMPCA cause spinocerebellar ataxia, autosomal recessive type 2 (SCAR2), characterized by non-progressive cerebellar ataxia and intellectual disability 1. The p.Ala377Thr mutation impairs both alpha subunit levels and MPP function, particularly affecting frataxin maturation, the protein depleted in Friedreich ataxia 1. More severe PMPCA variants can cause progressive developmental delay, cerebellar atrophy, and brain iron accumulation resembling neurodegeneration with brain iron accumulation (NBIA) 2. Recently, heterozygous PMPCA variants have been identified in dominant optic atrophy, where frameshift mutations reduce Ξ±-MPP levels and cause mitochondrial network hyperconnection, leading to retinal ganglion cell degeneration 3. The protein's dysfunction affects mitochondrial fusion-fission balance, highlighting its broader role beyond protein processing in maintaining mitochondrial network dynamics 3.

Sources cited
1
PMPCA encodes alpha-MPP subunit of mitochondrial processing peptidase and causes SCAR2 with cerebellar ataxia
PMID: 25808372
2
Severe PMPCA variants cause progressive symptoms with brain iron accumulation
PMID: 33272776
3
Heterozygous PMPCA variants cause dominant optic atrophy through mitochondrial network dysfunction
PMID: 35885985
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
autosomal recessive spinocerebellar ataxia 2Open Targets
0.75Strong
Autosomal recessive cerebelloparenchymal disorder type 3Open Targets
0.73Strong
neurodegenerative diseaseOpen Targets
0.50Moderate
Failure to thriveOpen Targets
0.42Moderate
optic atrophyOpen Targets
0.42Moderate
Bilateral ptosisOpen Targets
0.42Moderate
BlindnessOpen Targets
0.42Moderate
Chronic lactic acidosisOpen Targets
0.42Moderate
Diffuse cerebral and cerebellar atrophy-intractable seizures-progressive microcephaly syndromeOpen Targets
0.42Moderate
Floppy infantOpen Targets
0.42Moderate
Global brain atrophyOpen Targets
0.42Moderate
hypertrophic cardiomyopathyOpen Targets
0.42Moderate
HypoventilationOpen Targets
0.42Moderate
normal pressure hydrocephalusOpen Targets
0.42Moderate
Restrictive external ophthalmoplegiaOpen Targets
0.42Moderate
Severe global developmental delayOpen Targets
0.42Moderate
mitochondrial diseaseOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
cerebellar ataxiaOpen Targets
0.12Weak
asthmaOpen Targets
0.10Weak
Spinocerebellar ataxia, autosomal recessive, 2UniProt
Pathogenic Variants12
NM_015160.3(PMPCA):c.1354C>T (p.Gln452Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 452
NM_015160.3(PMPCA):c.364C>T (p.Arg122Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 122
NM_015160.3(PMPCA):c.1221del (p.Ile408fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 408
NM_015160.3(PMPCA):c.100del (p.Ser34fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 34
NM_015160.3(PMPCA):c.1204C>T (p.Arg402Ter)Likely pathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜…β˜†β˜†β˜†β†’ Residue 402
NM_015160.3(PMPCA):c.1408+1G>APathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜…β˜†β˜†β˜†
NM_015160.3(PMPCA):c.287C>T (p.Ser96Leu)Pathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜†β˜†β˜†β˜†2016β†’ Residue 96
NM_015160.3(PMPCA):c.1543G>A (p.Gly515Arg)Pathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜†β˜†β˜†β˜†2016β†’ Residue 515
NM_015160.3(PMPCA):c.1129G>A (p.Ala377Thr)Pathogenic
13 conditions|Autosomal recessive spinocerebellar ataxia 2
β˜†β˜†β˜†β˜†2016β†’ Residue 377
NM_015160.3(PMPCA):c.1066G>A (p.Gly356Ser)Pathogenic
13 conditions
β˜†β˜†β˜†β˜†2016β†’ Residue 356
NM_015160.3(PMPCA):c.64C>T (p.Arg22Trp)Pathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜†β˜†β˜†β˜†β†’ Residue 22
NM_015160.3(PMPCA):c.554G>A (p.Arg185Gln)Pathogenic
Autosomal recessive spinocerebellar ataxia 2
β˜†β˜†β˜†β˜†β†’ Residue 185
View on ClinVar β†—
Related Genes
IMMP2LShared pathway100%FXNProtein interaction100%UQCR10Protein interaction100%NDUFS2Protein interaction100%UQCR11Protein interaction100%UQCRFS1Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Heart
66%
Bone Marrow
52%
Ovary
36%
Lung
34%
Brain
24%
Gene Interaction Network
Click a node to explore
PMPCAIMMP2LFXNUQCR10NDUFS2UQCR11UQCRFS1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q10713
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.11LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.82 [0.62–1.11]
RankingsWhere PMPCA stands among ~20K protein-coding genes
  • #5,328of 20,598
    Most Researched90
  • #2,672of 5,498
    Most Pathogenic Variants12
  • #11,390of 17,882
    Most Constrained (LOEUF)1.11
Genes detectedPMPCA
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Identification of diagnostic biomarkers and mitochondrial metabolic characteristics in sepsis-associated acute kidney injury.
PMID: 41107920
Eur J Med Res Β· 2025
1.00
2
Nuclear-mitochondrial proteins: too much to process?
PMID: 26013806
Brain Β· 2015
0.90
3
PMPCA mutations cause abnormal mitochondrial protein processing in patients with non-progressive cerebellar ataxia.
PMID: 25808372
Brain Β· 2015
0.80
4
Evaluation of renal replacement therapy in children and adolescents in the state of Amazonas, Brazil.
PMID: 35442270
Rev Paul Pediatr Β· 2022
0.70
5
Next-Generation Sequencing Identifies Novel
PMID: 35885985
Genes (Basel) Β· 2022
0.60