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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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POLR1E
RNA polymerase I subunit E
Chromosome 9 · 9p13.2
NCBI Gene: 64425Ensembl: ENSG00000137054.17HGNC: HGNC:17631UniProt: B4E005
90PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmtranscription initiation at RNA polymerase I promotertranscription elongation by RNA polymerase Inucleolar large rRNA transcription by RNA polymerase Ineurodegenerative diseasemajor depressive disordercolorectal cancerhuman african trypanosomiasis
✦AI Summary

POLR1E is a core subunit of RNA polymerase I (Pol I), the enzyme responsible for synthesizing ribosomal RNA precursors 1. As a component of the Pol I complex, POLR1E participates in forming the transcription initiation complex at rRNA gene promoters, facilitating interactions between Pol I and the transcription factor UBTF/UBF 1. The protein localizes to the nucleolus and fibrillar center, consistent with its role in coordinating Pol I-dependent rRNA synthesis 2. Disease relevance spans multiple conditions. Truncating POLR1E variants were identified in three independent pedigrees with familial Hodgkin lymphoma, suggesting genetic predisposition to this hematological malignancy 3. POLR1E expression is significantly elevated in multiple sclerosis during acute clinical and radiological relapse (p=0.0001), implicating dysregulated Pol I pathway activity in MS pathogenesis 4. POLR1E expression correlates with increased tumor stage in bladder cancer and represents a potential diagnostic marker 5. Additionally, genome-wide association analysis identified POLR1E variants associated with lamotrigine treatment response in bipolar disorder patients 6. These findings suggest POLR1E dysfunction contributes to oncologic, neurological, and psychiatric disease pathogenesis, positioning the gene as both a biomarker and potential therapeutic target.

Sources cited
1
POLR1E is a component of RNA polymerase I and mediates interaction between Pol I and UBTF for transcription initiation complex formation
PMID: 24207024
2
Multiple truncating variants in POLR1E were found in 3 independent pedigrees with familial Hodgkin lymphoma
PMID: 35977101
3
POLR1E expression is significantly elevated (p=0.0001) in multiple sclerosis patients during acute radiological relapse compared with remission
PMID: 30316990
4
POLR1E expression correlates with increased bladder cancer tumor stage and represents a potential diagnostic marker
PMID: 23470167
5
POLR1E variants show gene-level association with lamotrigine treatment response in bipolar disorder (p=2.53E-06)
PMID: 41714438
6
POLR1E levels remain unchanged in cells with UBTF gain-of-function variant, indicating it is a component of the Pol I transcription complex
PMID: 28777933
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
major depressive disorderOpen Targets
0.32Weak
colorectal cancerOpen Targets
0.01Suggestive
human african trypanosomiasisOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
liver cancerOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
viral diseaseOpen Targets
0.00Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.00Suggestive
smallpoxOpen Targets
0.00Suggestive
glioblastoma multiformeOpen Targets
0.00Suggestive
esophageal squamous cell carcinomaOpen Targets
0.00Suggestive
melanomaOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
AIDSOpen Targets
0.00Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
uterine corpus endometrial carcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TAF1AProtein interaction100%POLIProtein interaction100%UTP18Protein interaction99%NAT10Protein interaction99%BOP1Protein interaction98%DDX18Protein interaction98%
Tissue Expression6 tissues
Ovary
100%
Liver
63%
Brain
60%
Heart
56%
Lung
47%
Bone Marrow
39%
Gene Interaction Network
Click a node to explore
POLR1ETAF1APOLIUTP18NAT10BOP1DDX18
PROTEIN STRUCTURE
Preparing viewer…
PDB7OB9 · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.12LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.85 [0.66–1.12]
RankingsWhere POLR1E stands among ~20K protein-coding genes
  • #5,329of 20,598
    Most Researched90
  • #11,585of 17,882
    Most Constrained (LOEUF)1.12
Genes detectedPOLR1E
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Discovery of novel predisposing coding and noncoding variants in familial Hodgkin lymphoma.
PMID: 35977101
Blood · 2023
1.00
2
Polymerase-1 pathway activation in acute multiple sclerosis relapse.
PMID: 30316990
Autoimmun Rev · 2018
0.90
3
Tumour expression of bladder cancer-associated urinary proteins.
PMID: 23470167
BJU Int · 2013
0.80
4
Heterozygous De Novo UBTF Gain-of-Function Variant Is Associated with Neurodegeneration in Childhood.
PMID: 28777933
Am J Hum Genet · 2017
0.70
5
Pharmacogenomics of antiepileptic drug mood stabilizer treatment response in bipolar disorder: A MoStGen Consortium study.
PMID: 41714438
Mol Psychiatry · 2026
0.60