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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PRDM4
PR/SET domain 4
Chromosome 12 · 12q23.3
NCBI Gene: 11108Ensembl: ENSG00000110851.13HGNC: HGNC:9348UniProt: B3KPI0
28PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmprotein bindingsequence-specific double-stranded DNA bindingDNA-binding transcription activator activity, RNA polymerase II-specificneurodegenerative diseaseosteoarthritis, kneeandrogenetic alopecianeoplasm
✦AI Summary

PRDM4 (PR/SET domain 4) is a transcription factor localized to the nucleus through mechanisms involving zinc fingers 1, 2, 5, and 6 1, where it regulates gene expression through RNA polymerase II-mediated transcription. The protein functions in cell differentiation and proliferation control across multiple tissues including brain, corneal endothelium, and adipose tissue 2, 3. In cancer biology, PRDM4 exhibits context-dependent roles: it functions as a YAP co-activator to promote cell invasion by inducing leukocyte-specific integrin β2 (ITGB2) expression in metastatic prostate cancer 4, yet acts as a tumor suppressor in cervical carcinoma by transactivating PTEN expression to inactivate the PI3K/AKT proliferation pathway, inducing G0/G1 cell cycle arrest 5. PRDM4 maps to chromosome 12-q24.1, a known tumor suppressor locus 6. The gene is expressed in neural stem cells during development 7 and can be therapeutically induced by small molecules like butein to promote white adipose tissue browning and thermogenesis 3. PRDM4 has been identified as a genetic marker associated with psychological endurance threshold 8, though this finding requires further validation.

Sources cited
1
PRDM4 nuclear localization requires zinc fingers 1, 2, 5, and 6
PMID: 27125459
2
PRDM4 is expressed in corneal endothelial cells and other differentiated tissues
PMID: 28228349
3
Butein-induced PRDM4 promotes white adipose tissue browning via UCP1 induction
PMID: 27159578
4
PRDM4 mediates YAP-induced cell invasion through ITGB2 transactivation in metastatic cancer
PMID: 29669796
5
PRDM4 inhibits cervical cancer proliferation by transactivating PTEN to inactivate PI3K/AKT signaling
PMID: 33846573
6
PRDM4 maps to chromosome 12q23-q24.1 tumor suppressor locus and is widely expressed
PMID: 10552934
7
PRDM4 is expressed in neural stem cells during development
PMID: 35728967
8
PRDM4 identified as a genetic marker of psychological endurance threshold
PMID: 31099190
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.31Weak
osteoarthritis, kneeOpen Targets
0.29Weak
androgenetic alopeciaOpen Targets
0.28Weak
neoplasmOpen Targets
0.09Suggestive
cervical cancerOpen Targets
0.07Suggestive
cardiomyopathyOpen Targets
0.05Suggestive
vertebral column disorderOpen Targets
0.05Suggestive
fibular hemimeliaOpen Targets
0.04Suggestive
triokinase and FMN cyclase deficiency syndromeOpen Targets
0.03Suggestive
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.03Suggestive
joint diseaseOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.03Suggestive
ankylosing spondylitisOpen Targets
0.03Suggestive
diabetic ketoacidosisOpen Targets
0.02Suggestive
obesityOpen Targets
0.02Suggestive
type 2 diabetes mellitusOpen Targets
0.02Suggestive
osteoarthritisOpen Targets
0.02Suggestive
essential tremorOpen Targets
0.02Suggestive
preeclampsiaOpen Targets
0.02Suggestive
squamous cell carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
NGFProtein interaction100%NGFRProtein interaction91%PRMT5Protein interaction86%LOC728743Shared pathway50%ATXN7L3BShared pathway50%CAVIN4Shared pathway50%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
70%
Brain
66%
Heart
62%
Lung
60%
Liver
35%
Gene Interaction Network
Click a node to explore
PRDM4NGFNGFRPRMT5LOC728743ATXN7L3BCAVIN4
PROTEIN STRUCTURE
Preparing viewer…
PDB3DB5 · 2.15 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.73LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.56 [0.43–0.73]
RankingsWhere PRDM4 stands among ~20K protein-coding genes
  • #12,419of 20,598
    Most Researched28
  • #5,730of 17,882
    Most Constrained (LOEUF)0.73
Genes detectedPRDM4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Somatic retrotransposition in the developing rhesus macaque brain.
PMID: 35728967
Genome Res · 2022
1.00
2
AKT1, PRDM4, and BAX are the natural markers of psychological endurance threshold.
PMID: 31099190
Brain Behav · 2019
0.90
3
PRDM4 mediates YAP-induced cell invasion by activating leukocyte-specific integrin β2 expression.
PMID: 29669796
EMBO Rep · 2018
0.80
4
PRDM4 inhibits cell proliferation and tumorigenesis by inactivating the PI3K/AKT signaling pathway through targeting of PTEN in cervical carcinoma.
PMID: 33846573
Oncogene · 2021
0.70
5
Zinc fingers 1, 2, 5 and 6 of transcriptional regulator, PRDM4, are required for its nuclear localisation.
PMID: 27125459
Biochem Biophys Res Commun · 2016
0.60