HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PSAT1
phosphoserine aminotransferase 1
Chromosome 9 Β· 9q21.2
NCBI Gene: 29968Ensembl: ENSG00000135069.15HGNC: HGNC:19129UniProt: Q9Y617
140PubMed Papers
22Diseases
0Drugs
34Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
negative regulation of ferroptosisO-phospho-L-serine:2-oxoglutarate transaminase activityprotein bindingidentical protein bindingNeu-Laxova syndrome 2Phosphoserine aminotransferase deficiencyPSAT deficiencyNeu-Laxova syndrome
✦AI Summary

PSAT1 (phosphoserine aminotransferase 1) catalyzes the second step of the phosphorylated L-serine biosynthetic pathway, converting 3-phosphohydroxypyruvate and L-glutamate to O-phosphoserine in a pyridoxal 5'-phosphate-dependent transamination reaction 1. Beyond canonical serine synthesis, PSAT1 functions as a ferroptosis inhibitor by promoting GPX4 stability through a CAMK2A-dependent phosphorylation mechanism; phosphorylated PSAT1 interacts with GPX4 and provides 2-oxoglutarate to EGLN3, enabling GPX4 hydroxylation and preventing autophagy-mediated degradation 2. In cancer contexts, PSAT1 expression is transcriptionally regulated by multiple pathways including NRF2-ATF4 signaling in non-small cell lung cancer 3, AMPK-HIF-1Ξ± signaling in glioblastoma 4, and m6A-IGF2BP3-mediated mRNA stabilization in hepatocellular carcinoma 5. PSAT1 protein stability is controlled by interplay between acetylation/deacetylation and ubiquitination in lung adenocarcinoma 6, and by AURKB-HNRNPM-mediated mRNA degradation suppression in colorectal cancer 7. Clinically, elevated PSAT1 correlates with poor prognosis across multiple cancers and contributes to chemoresistance and immunotherapy resistance 82. Germline PSAT1 mutations cause Neu-Laxova syndrome 2 and phosphoserine aminotransferase deficiency.

Sources cited
1
PSAT1 (phosphoserine aminotransferase 1) catalyzes the second step of the phosphorylated L-serine biosynthetic pathway, converting 3-phosphohydroxypyruvate and L-glutamate to O-phosphoserine in a pyridoxal 5'-phosphate-dependent transamination reaction .
PMID: 36851825
2
Beyond canonical serine synthesis, PSAT1 functions as a ferroptosis inhibitor by promoting GPX4 stability through a CAMK2A-dependent phosphorylation mechanism; phosphorylated PSAT1 interacts with GPX4 and provides 2-oxoglutarate to EGLN3, enabling GPX4 hydroxylation and preventing autophagy-mediated degradation .
PMID: 40281343
3
In cancer contexts, PSAT1 expression is transcriptionally regulated by multiple pathways including NRF2-ATF4 signaling in non-small cell lung cancer , AMPK-HIF-1Ξ± signaling in glioblastoma , and m6A-IGF2BP3-mediated mRNA stabilization in hepatocellular carcinoma .
PMID: 26482881
4
In cancer contexts, PSAT1 expression is transcriptionally regulated by multiple pathways including NRF2-ATF4 signaling in non-small cell lung cancer , AMPK-HIF-1Ξ± signaling in glioblastoma , and m6A-IGF2BP3-mediated mRNA stabilization in hepatocellular carcinoma .
PMID: 38098117
5
In cancer contexts, PSAT1 expression is transcriptionally regulated by multiple pathways including NRF2-ATF4 signaling in non-small cell lung cancer , AMPK-HIF-1Ξ± signaling in glioblastoma , and m6A-IGF2BP3-mediated mRNA stabilization in hepatocellular carcinoma .
PMID: 39489921
6
PSAT1 protein stability is controlled by interplay between acetylation/deacetylation and ubiquitination in lung adenocarcinoma , and by AURKB-HNRNPM-mediated mRNA degradation suppression in colorectal cancer .
PMID: 39433916
7
PSAT1 protein stability is controlled by interplay between acetylation/deacetylation and ubiquitination in lung adenocarcinoma , and by AURKB-HNRNPM-mediated mRNA degradation suppression in colorectal cancer .
PMID: 40784984
Disease Associationsβ“˜22
Neu-Laxova syndrome 2Open Targets
0.81Strong
Phosphoserine aminotransferase deficiencyOpen Targets
0.68Moderate
PSAT deficiencyOpen Targets
0.62Moderate
Neu-Laxova syndromeOpen Targets
0.46Moderate
neurometabolic disorder due to serine deficiencyOpen Targets
0.44Moderate
Neu-Laxova syndrome 1Open Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.29Weak
heart diseaseOpen Targets
0.23Weak
smoking initiationOpen Targets
0.22Weak
obesityOpen Targets
0.21Weak
bronchial diseaseOpen Targets
0.20Weak
substance-related disorderOpen Targets
0.20Weak
AnisometropiaOpen Targets
0.20Weak
Abnormality of the gastrointestinal tractOpen Targets
0.20Weak
osteoarthritisOpen Targets
0.20Weak
amputationOpen Targets
0.20Weak
ulcerative colitisOpen Targets
0.20Weak
tongue cancerOpen Targets
0.19Weak
Abnormal pupillary functionOpen Targets
0.19Weak
pneumonitisOpen Targets
0.19Weak
Neu-Laxova syndrome 2UniProt
Phosphoserine aminotransferase deficiencyUniProt
Pathogenic Variants34
NM_058179.4(PSAT1):c.296_297delinsTG (p.Ala99Val)Pathogenic
not provided|Neu-Laxova syndrome 2|PSAT1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 99
NM_058179.4(PSAT1):c.299A>C (p.Asp100Ala)Pathogenic
PSAT deficiency|not provided|Neu-Laxova syndrome 2|PSAT1-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 100
NM_058179.4(PSAT1):c.570+2T>CLikely pathogenic
PSAT1-related disorder|Neu-Laxova syndrome 2
β˜…β˜…β˜†β˜†2024
NM_058179.4(PSAT1):c.949G>T (p.Glu317Ter)Pathogenic
PSAT1-related disorder|Neu-Laxova syndrome 2
β˜…β˜…β˜†β˜†2024β†’ Residue 317
NM_058179.4(PSAT1):c.870-1G>TPathogenic
not provided|Neu-Laxova syndrome 2|Neurometabolic disorder due to serine deficiency
β˜…β˜…β˜†β˜†2024
NM_058179.4(PSAT1):c.413del (p.Ser138fs)Pathogenic
PSAT1-related disorder|Neu-Laxova syndrome 2
β˜…β˜…β˜†β˜†2023β†’ Residue 138
NM_058179.4(PSAT1):c.82_83del (p.Glu28fs)Pathogenic
Neu-Laxova syndrome 2|PSAT deficiency;Neu-Laxova syndrome 2
β˜…β˜…β˜†β˜†2022β†’ Residue 28
NM_058179.4(PSAT1):c.107del (p.Gly36fs)Pathogenic
PSAT deficiency|not provided|Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2026β†’ Residue 36
NM_058179.4(PSAT1):c.129T>G (p.Ser43Arg)Likely pathogenic
not provided|PSAT deficiency
β˜…β˜†β˜†β˜†2025β†’ Residue 43
NM_058179.4(PSAT1):c.536C>G (p.Ser179Ter)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2025β†’ Residue 179
NM_058179.4(PSAT1):c.420G>A (p.Trp140Ter)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2025β†’ Residue 140
NM_058179.4(PSAT1):c.43_60+9delLikely pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2025
NM_058179.4(PSAT1):c.976G>T (p.Glu326Ter)Likely pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 326
NM_058179.4(PSAT1):c.536C>T (p.Ser179Leu)Pathogenic
Neu-Laxova syndrome 2|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 179
NM_058179.4(PSAT1):c.60+2T>CLikely pathogenic
PSAT1-related disorder
β˜…β˜†β˜†β˜†2024
NM_058179.4(PSAT1):c.598_605dup (p.Gly203fs)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 203
NM_058179.4(PSAT1):c.664C>T (p.Arg222Ter)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 222
NM_058179.4(PSAT1):c.880G>T (p.Glu294Ter)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 294
NM_058179.4(PSAT1):c.770G>A (p.Trp257Ter)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2024β†’ Residue 257
NM_058179.4(PSAT1):c.510_514del (p.Ala171fs)Pathogenic
Neu-Laxova syndrome 2
β˜…β˜†β˜†β˜†2023β†’ Residue 171
View on ClinVar β†—
Related Genes
CTBP1Protein interaction95%CTBP2Protein interaction95%ASNSProtein interaction92%ALDH18A1Protein interaction92%GRHPRProtein interaction88%MTHFD1Protein interaction87%
Tissue Expression6 tissues
Liver
100%
Brain
86%
Bone Marrow
5%
Ovary
2%
Lung
1%
Heart
1%
Gene Interaction Network
Click a node to explore
PSAT1CTBP1CTBP2ASNSALDH18A1GRHPRMTHFD1
PROTEIN STRUCTURE
Preparing viewer…
PDB8A5V Β· 2.46 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.30LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.00 [0.78–1.30]
RankingsWhere PSAT1 stands among ~20K protein-coding genes
  • #3,289of 20,598
    Most Researched140 Β· top quartile
  • #1,696of 5,498
    Most Pathogenic Variants34
  • #13,729of 17,882
    Most Constrained (LOEUF)1.30
Genes detectedPSAT1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
NRF2 regulates serine biosynthesis in non-small cell lung cancer.
PMID: 26482881
Nat Genet Β· 2015
1.00
2
AMPK-HIF-1Ξ± signaling enhances glucose-derived de novo serine biosynthesis to promote glioblastoma growth.
PMID: 38098117
J Exp Clin Cancer Res Β· 2023
0.90
3
Targeting p300/CBP Attenuates Hepatocellular Carcinoma Progression through Epigenetic Regulation of Metabolism.
PMID: 33361394
Cancer Res Β· 2021
0.80
4
PSAT1 impairs ferroptosis and reduces immunotherapy efficacy via GPX4 hydroxylation.
PMID: 40281343
Nat Chem Biol Β· 2025
0.70
5
N6-Methyladenosine modification activates the serine synthesis pathway to mediate therapeutic resistance in liver cancer.
PMID: 39489921
Mol Ther Β· 2024
0.60