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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PTPRO
protein tyrosine phosphatase receptor type O
Chromosome 12 Β· 12p12.3|12p13-p12
NCBI Gene: 5800Ensembl: ENSG00000151490.16HGNC: HGNC:9678UniProt: Q16827
75PubMed Papers
21Diseases
0Drugs
10Pathogenic Variants
FUNCTIONAL ROLE
Receptor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingprotein tyrosine phosphatase activitymonocyte chemotaxisextracellular exosomefamilial idiopathic steroid-resistant nephrotic syndromeneurodegenerative diseaseendometriosisParkinson disease
✦AI Summary

PTPRO is a receptor protein tyrosine phosphatase with multifaceted roles in cell regulation and disease suppression. As a phosphatase, PTPRO dephosphorylates key signaling proteins including VCP/p97 1, JAK2 2, and STAT3 3, thereby modulating critical intracellular pathways. In neural development, PTPRO serves as a specific surface marker of midbrain dopaminergic progenitors and predicts successful neuronal differentiation 4. It also functions in spinal cord injury recovery by promoting anti-inflammatory M2 microglial polarization through NF-ΞΊB/STAT6 pathway inhibition 5. PTPRO exhibits robust tumor suppressor activity across multiple cancer types. In hepatocellular carcinoma, hepatic methylation-mediated PTPRO silencing promotes tumorigenesis 1. In renal cell carcinoma, reduced PTPRO expression correlates with poor prognosis and diminished immune infiltration 6. Similarly, in lung cancers (adenocarcinoma and squamous cell carcinoma), PTPRO suppresses progression via mitochondria-dependent apoptosis and epithelial-to-mesenchymal transition inhibition 37. In breast cancer, PTPRO represses lung metastasis by inhibiting JAK2-YAP signaling 2. Additionally, PTPRO marks cancer stem-like cells associated with organ-specific colorectal cancer metastasis 8. Clinically, PTPRO methylation and reduced expression emerge as independent prognostic biomarkers across cancers, with restoration of PTPRO expression representing a potential therapeutic strategy for multiple malignancies.

Sources cited
1
PTPRO is highly expressed in metastatic cancer stem-like cells in colorectal cancer
PMID: 38050068
2
PTPRO is a specific surface marker of midbrain dopaminergic progenitors and predicts neuronal differentiation success
PMID: 35700056
3
PTPRO is a tyrosine phosphatase that dephosphorylates VCP and functions as a tumor suppressor; promoter methylation suppresses PTPRO in hepatocellular carcinoma
PMID: 23533167
4
PTPRO inhibition promotes anti-inflammatory M2 microglial polarization through NF-ΞΊB/STAT6 signaling in spinal cord injury
PMID: 38565385
5
PTPRO expression is significantly lower in renal cell carcinoma; lower expression correlates with poor prognosis and reduced immune infiltration
PMID: 35117843
6
PTPRO represses breast cancer lung metastasis by inhibiting JAK2-YAP pathway activation through dephosphorylation
PMID: 40016288
7
PTPRO suppresses lung adenocarcinoma by inducing mitochondria-dependent apoptosis and restraining metastasis via JAK2/STAT3 pathway inhibition
PMID: 38182570
8
PTPRO is epigenetically silenced by promoter methylation in lung squamous cell carcinoma and functions as a tumor suppressor; methylation status predicts prognosis
PMID: 28586036
Disease Associationsβ“˜21
familial idiopathic steroid-resistant nephrotic syndromeOpen Targets
0.61Moderate
neurodegenerative diseaseOpen Targets
0.42Moderate
endometriosisOpen Targets
0.40Moderate
Parkinson diseaseOpen Targets
0.39Weak
nephrotic syndromeOpen Targets
0.37Weak
Alzheimer diseaseOpen Targets
0.37Weak
lysosomal storage diseaseOpen Targets
0.37Weak
multiple sclerosisOpen Targets
0.37Weak
hypertensionOpen Targets
0.36Weak
intelligenceOpen Targets
0.35Weak
Ovarian EndometriosisOpen Targets
0.29Weak
device complicationOpen Targets
0.28Weak
lagophthalmosOpen Targets
0.27Weak
endometriosis of pelvic peritoneumOpen Targets
0.26Weak
gastroesophageal reflux diseaseOpen Targets
0.25Weak
preeclampsiaOpen Targets
0.23Weak
mental processOpen Targets
0.22Weak
focal segmental glomerulosclerosisOpen Targets
0.13Weak
neoplasmOpen Targets
0.11Weak
breast cancerOpen Targets
0.11Weak
Nephrotic syndrome 6UniProt
Pathogenic Variants10
NM_030667.3(PTPRO):c.2803_2806del (p.Asp935fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 935
NM_030667.3(PTPRO):c.2712-1G>ALikely pathogenic
Nephrotic syndrome, type 6
β˜…β˜†β˜†β˜†2024
NM_030667.3(PTPRO):c.2027del (p.Lys676fs)Likely pathogenic
Nephrotic syndrome, type 6
β˜…β˜†β˜†β˜†2024β†’ Residue 676
NM_030667.3(PTPRO):c.1758del (p.Val587fs)Likely pathogenic
Nephrotic syndrome, type 6
β˜…β˜†β˜†β˜†2024β†’ Residue 587
NM_030667.3(PTPRO):c.2305-1G>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_030667.3(PTPRO):c.1241C>G (p.Ser414Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 414
NM_030667.3(PTPRO):c.1949del (p.Ser650fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 650
NM_030667.3(PTPRO):c.2712-2delLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2017
NM_030667.3(PTPRO):c.2829+1G>APathogenic
Nephrotic syndrome, type 6
β˜†β˜†β˜†β˜†2011
NM_030667.3(PTPRO):c.2627+1G>TPathogenic
Nephrotic syndrome, type 6
β˜†β˜†β˜†β˜†2011
View on ClinVar β†—
Related Genes
DRAXINShared pathway25%IGSF9Shared pathway15%CYFIP1Shared pathway14%CYFIP2Shared pathway12%SPOCK1Shared pathway12%DCCShared pathway12%
Tissue Expression6 tissues
Brain
100%
Lung
17%
Bone Marrow
9%
Heart
4%
Ovary
3%
Liver
2%
Gene Interaction Network
Click a node to explore
PTPRODRAXINIGSF9CYFIP1CYFIP2SPOCK1DCC
PROTEIN STRUCTURE
Preparing viewer…
PDB2GJT Β· 2.15 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.51Moderately Constrained
pLIβ“˜
0.17Tolerant
Observed/Expected LoF0.41 [0.33–0.51]
RankingsWhere PTPRO stands among ~20K protein-coding genes
  • #6,358of 20,598
    Most Researched75
  • #2,855of 5,498
    Most Pathogenic Variants10
  • #3,137of 17,882
    Most Constrained (LOEUF)0.51 Β· top quartile
Genes detectedPTPRO
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Single-cell transcriptomic analysis deciphers heterogenous cancer stem-like cells in colorectal cancer and their organ-specific metastasis.
PMID: 38050068
Gut Β· 2024
1.00
2
Human midbrain dopaminergic neuronal differentiation markers predict cell therapy outcomes in a Parkinson's disease model.
PMID: 35700056
J Clin Invest Β· 2022
0.90
3
Methylation of the PTPRO gene in human hepatocellular carcinoma and identification of VCP as its substrate.
PMID: 23533167
J Cell Biochem Β· 2013
0.80
4
PTPRO inhibition ameliorates spinal cord injury through shifting microglial M1/M2 polarization via the NF-ΞΊB/STAT6 signaling pathway.
PMID: 38565385
Biochim Biophys Acta Mol Basis Dis Β· 2024
0.70
5
PTPRO predicts patient prognosis and correlates with immune infiltrates in human clear cell renal cell carcinoma.
PMID: 35117843
Transl Cancer Res Β· 2020
0.60