HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RANBP9
RAN binding protein 9
Chromosome 6 · 6p23
NCBI Gene: 10048Ensembl: ENSG00000010017.14HGNC: HGNC:13727UniProt: Q96S59
185PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of ERK1 and ERK2 cascadecytoplasmnucleusnucleoplasmbreast carcinomabreast canceralcohol drinkingbreast neoplasm
✦AI Summary

RANBP9 is a multifunctional scaffolding protein that serves as a core component of the CTLH E3 ubiquitin-protein ligase complex 1. Its primary roles include mediating cell spreading and actin cytoskeleton rearrangement 2, enhancing HGF-MET signaling through Sos recruitment and Ras pathway activation 3, and regulating transcription factor activity including stabilization of TP73 alpha and enhancement of androgen receptor transactivation 4. RANBP9 inhibits DYRK1A/1B kinase activity and FMR1 RNA binding 5. The protein functions as part of a regulatory rheostat with RANBP10, where their relative expression ratio controls CTLH complex ubiquitylation output and cell proliferation 6. RANBP9 participates in DNA damage response signaling through ATM pathway involvement 7 and regulates AMPK activity via ubiquitination 8. Elevated RANBP9 expression is associated with poor prognosis in breast cancer 9 and correlates with reduced lenvatinib sensitivity in hepatocellular carcinoma through MFN2 regulation 10. In neurodegeneration, RANBP9 enhances tau pathology through interaction with Hsp90/Hsc70 chaperone complexes 11.

Sources cited
1
RANBP9 is a core component of the CTLH E3 ubiquitin-protein ligase complex that mediates HBP1 ubiquitination and degradation
PMID: 29911972
2
RANBP9 acts as a mediator of cell spreading and actin cytoskeleton rearrangement
PMID: 18710924
3
RANBP9 enhances HGF-MET signaling by recruiting Sos and activating the Ras pathway
PMID: 12147692
4
RANBP9 enhances dihydrotestosterone-induced transactivation activity of androgen receptor
PMID: 12361945
5
RANBP9 stabilizes TP73 isoform Alpha and increases its proapoptotic activity
PMID: 15558019
6
RANBP9 and RANBP10 balance each other to regulate NSCLC proliferation through CTLH complex modulation
PMID: 40883813
7
RANBP9 is involved in ATM signaling upon DNA damage and cells lacking RANBP9 show increased sensitivity to genotoxic treatment
PMID: 29914204
8
RANBP9 is a component of the GID-complex that negatively regulates AMPK activity through ubiquitination
PMID: 31795790
9
RANBP9 expression is elevated in breast cancer tissues and associated with poor prognosis
PMID: 34875851
10
RANBP9 is recruited by FAM111B to promote MFN2 ubiquitination and affects lenvatinib sensitivity in hepatocellular carcinoma
PMID: 40855067
11
RANBP9 enhances tau pathology through interaction with Hsp90/Hsc70 chaperone complexes and is elevated in Alzheimer's disease
PMID: 29016855
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.47Moderate
breast cancerOpen Targets
0.46Moderate
alcohol drinkingOpen Targets
0.37Weak
breast neoplasmOpen Targets
0.33Weak
luminal A breast carcinomaOpen Targets
0.33Weak
ovarian carcinomaOpen Targets
0.33Weak
estrogen-receptor positive breast cancerOpen Targets
0.33Weak
diabetes mellitusOpen Targets
0.32Weak
autismOpen Targets
0.11Weak
non-small cell lung carcinomaOpen Targets
0.09Suggestive
Abnormality of the skeletal systemOpen Targets
0.09Suggestive
azoospermiaOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
osteosarcomaOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
primary ovarian insufficiencyOpen Targets
0.06Suggestive
isochromosomy YpOpen Targets
0.06Suggestive
spermatogenic failure 25Open Targets
0.06Suggestive
spermatogenic failure 50Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MKLN1Protein interaction100%RMND5AProtein interaction100%WDR26Protein interaction100%GID8Protein interaction100%GID4Protein interaction99%L1CAMProtein interaction96%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
68%
Heart
38%
Ovary
28%
Lung
28%
Liver
25%
Gene Interaction Network
Click a node to explore
RANBP9MKLN1RMND5AWDR26GID8GID4L1CAM
PROTEIN STRUCTURE
Preparing viewer…
PDB5JI7 · 1.51 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.32Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.12–0.32]
RankingsWhere RANBP9 stands among ~20K protein-coding genes
  • #2,336of 20,598
    Most Researched185 · top quartile
  • #1,281of 17,882
    Most Constrained (LOEUF)0.32 · top 10%
Genes detectedRANBP9
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
A comprehensive bioinformatic analysis of
PMID: 34875851
Epigenomics · 2022
1.00
2
RANBP9 and RANBP10 cooperate in regulating non-small cell lung cancer proliferation.
PMID: 40883813
J Exp Clin Cancer Res · 2025
0.90
3
The human GID complex engages two independent modules for substrate recruitment.
PMID: 34647674
EMBO Rep · 2021
0.84
4
An in vivo "turning model" reveals new RanBP9 interactions in lung macrophages.
PMID: 40223093
Cell Death Discov · 2025
0.80
5
Scorpins in the DNA Damage Response.
PMID: 29914204
Int J Mol Sci · 2018
0.70