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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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RCAN3
RCAN family member 3
Chromosome 1 · 1p36.11
NCBI Gene: 11123Ensembl: ENSG00000117602.14HGNC: HGNC:3042UniProt: Q9UKA8
32PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
troponin I bindingphosphatase bindingprotein bindingcytoplasmsevere acute respiratory syndromehair colorPeptic ulcerplacental retention
✦AI Summary

RCAN3 (Regulator of Calcineurin 3) is a multifunctional protein that primarily inhibits calcineurin-dependent signaling pathways through direct binding to the catalytic domain of calcineurin A 1. The protein contains a conserved PxIxIT motif that competes with NFATc transcription factors for calcineurin binding, thereby inhibiting NFATc dephosphorylation and activation 2. RCAN3 exhibits complex alternative splicing patterns, with at least 21 different isoforms identified that show ubiquitous tissue expression 3. Functionally, RCAN3 regulates cell proliferation in endothelial cells, inhibiting both basal and VEGF-stimulated HUVEC growth independently of inflammatory gene expression 1. The protein also interacts with cardiac troponin I, suggesting roles in cardiac function 4. Disease relevance includes cardiac development, where RCAN3 deficiency contributes to noncompaction of ventricular myocardium, and homozygous missense mutations cause marked cardiac dysfunction 5. In cancer, RCAN3 functions as a tumor suppressor, particularly in triple-negative breast cancer, where it inhibits tumor growth and angiogenesis through calcineurin-NFATc pathway suppression 62. Additionally, RCAN3 negatively regulates calcium-dependent cytotoxicity in CD8+ T lymphocytes 7 and shows potential as a pan-cancer diagnostic and prognostic biomarker 8.

Sources cited
1
RCAN3 inhibits calcineurin and regulates endothelial cell proliferation
PMID: 21042787
2
RCAN3 contains PxIxIT motif that competes with NFATc for calcineurin binding and acts as tumor suppressor
PMID: 25916653
3
RCAN3 has complex alternative splicing with 21 isoforms and ubiquitous tissue expression
PMID: 21961037
4
RCAN3 interacts with cardiac troponin I
PMID: 18022329
5
RCAN3 deficiency contributes to noncompaction of ventricular myocardium
PMID: 38181896
6
RCAN3 inhibits tumor growth and angiogenesis in triple-negative breast cancer
PMID: 35640493
7
RCAN3 negatively regulates calcium-dependent cytotoxicity in CD8+ T lymphocytes
PMID: 37075611
8
RCAN3 shows potential as pan-cancer diagnostic and prognostic biomarker
PMID: 39219199
Disease Associationsⓘ20
severe acute respiratory syndromeOpen Targets
0.37Weak
hair colorOpen Targets
0.31Weak
Peptic ulcerOpen Targets
0.28Weak
placental retentionOpen Targets
0.25Weak
Romano-Ward syndromeOpen Targets
0.09Suggestive
cutaneous melanomaOpen Targets
0.08Suggestive
familial atrial fibrillationOpen Targets
0.08Suggestive
cancerOpen Targets
0.08Suggestive
peripheral arterial diseaseOpen Targets
0.08Suggestive
Brugada syndromeOpen Targets
0.07Suggestive
Familial progressive cardiac conduction defectOpen Targets
0.07Suggestive
Familial short QT syndromeOpen Targets
0.07Suggestive
atrial fibrillationOpen Targets
0.07Suggestive
Arrhythmogenic right ventricular dysplasiaOpen Targets
0.07Suggestive
long QT syndrome 11Open Targets
0.06Suggestive
hypertrophic cardiomyopathyOpen Targets
0.06Suggestive
Rare familial disorder with hypertrophic cardiomyopathyOpen Targets
0.06Suggestive
Brugada syndrome 9Open Targets
0.06Suggestive
cleft palateOpen Targets
0.06Suggestive
long QT syndrome 10Open Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PPP3CAProtein interaction89%PPP3CBProtein interaction89%PPP3CCProtein interaction89%PPP3R1Protein interaction89%LBX1Shared pathway50%SCML2Shared pathway50%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
69%
Heart
32%
Lung
23%
Liver
9%
Ovary
3%
Gene Interaction Network
Click a node to explore
RCAN3PPP3CAPPP3CBPPP3CCPPP3R1LBX1SCML2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9UKA8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.31LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.91 [0.64–1.31]
RankingsWhere RCAN3 stands among ~20K protein-coding genes
  • #11,596of 20,598
    Most Researched32
  • #13,744of 17,882
    Most Constrained (LOEUF)1.31
Genes detectedRCAN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Human RCAN3 gene expression and cell growth in endothelial cells.
PMID: 21042787
Int J Mol Med · 2010
1.00
2
Identification and analysis of human RCAN3 (DSCR1L2) mRNA and protein isoforms.
PMID: 18022329
Gene · 2008
0.90
3
RCAN family member 3 deficiency contributes to noncompaction of the ventricular myocardium.
PMID: 38181896
J Genet Genomics · 2024
0.80
4
Complexity of bidirectional transcription and alternative splicing at human RCAN3 locus.
PMID: 21961037
PLoS One · 2011
0.70
5
Regulator of calcineurin 3 as a novel predictor of diagnosis and prognosis in pan-cancer.
PMID: 39219199
Croat Med J · 2024
0.60