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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RRP15
ribosomal RNA processing 15 homolog
Chromosome 1 · 1q41
NCBI Gene: 51018Ensembl: ENSG00000067533.7HGNC: HGNC:24255UniProt: Q9Y3B9
91PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
maturation of 5.8S rRNAmaturation of LSU-rRNApreribosome, large subunit precursorrRNA processingmultiple sclerosisAlzheimer diseaselysosomal storage diseaseneurodegenerative disease
✦AI Summary

RRP15 is a nucleolar protein essential for ribosomal RNA (rRNA) processing and ribosome biogenesis 1. It localizes to the nucleolus and regulates both rRNA transcription and the maturation of 5.8S and large subunit rRNA, functioning in both pre-40S and pre-60S ribosomal subunit assembly 1. RRP15 is critical for nucleolar formation and checkpoint control; its depletion induces nucleolar stress that triggers the RPL5/RPL11/5S rRNA-Mdm2-p53 axis in p53-proficient cells (causing G1 arrest) or ATR-Chk1-mediated DNA damage responses in p53-deficient cells 1. Clinically, RRP15 is frequently upregulated in multiple cancers including colorectal cancer, esophageal cancer, pancreatic cancer, colon cancer, and hepatocellular carcinoma, where elevated expression correlates with poor prognosis 2345. RRP15 knockdown suppresses cancer cell proliferation, invasion, and epithelial-mesenchymal transition (EMT) through ribosome stress pathways, including LZTS2-mediated β-catenin suppression in colorectal cancer and PATZ1-associated LAMC2/FAK pathway inhibition in hepatocellular carcinoma 25. Notably, RRP15 knockdown inhibits autophagy and induces apoptosis in pancreatic cancer cells 6. In a brain-specific context, RRP15 variants in excitatory neurons show protective associations with migraine risk 7. These findings position RRP15 as a potential therapeutic target, particularly in high-ribosome-biogenesis cancers.

Sources cited
1
RRP15 is a nucleolar protein essential for ribosomal RNA (rRNA) processing and ribosome biogenesis .
PMID: 28099941
2
Notably, RRP15 knockdown inhibits autophagy and induces apoptosis in pancreatic cancer cells .
PMID: 36682038
3
In a brain-specific context, RRP15 variants in excitatory neurons show protective associations with migraine risk .
PMID: 41345547
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
multiple sclerosisOpen Targets
0.52Moderate
Alzheimer diseaseOpen Targets
0.47Moderate
lysosomal storage diseaseOpen Targets
0.46Moderate
neurodegenerative diseaseOpen Targets
0.46Moderate
Parkinson diseaseOpen Targets
0.46Moderate
vascular diseaseOpen Targets
0.31Weak
diaphragmatic herniaOpen Targets
0.24Weak
heart diseaseOpen Targets
0.24Weak
urinary system diseaseOpen Targets
0.24Weak
atopic eczemaOpen Targets
0.19Weak
infectious meningitisOpen Targets
0.19Weak
sialolithiasisOpen Targets
0.19Weak
liver diseaseOpen Targets
0.19Weak
multinodular goiterOpen Targets
0.11Weak
rheumatic heart diseaseOpen Targets
0.10Suggestive
hepatocellular carcinomaOpen Targets
0.10Suggestive
Inguinal herniaOpen Targets
0.09Suggestive
HerniaOpen Targets
0.09Suggestive
nontoxic goiterOpen Targets
0.08Suggestive
ThyrotoxicosisOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
UTP3Protein interaction100%DDX18Protein interaction98%MDN1Protein interaction96%KRR1Protein interaction96%GSCProtein interaction95%GTPBP4Protein interaction94%
Tissue Expression6 tissues
Heart
100%
Brain
77%
Bone Marrow
74%
Ovary
56%
Lung
55%
Liver
45%
Gene Interaction Network
Click a node to explore
RRP15UTP3DDX18MDN1KRR1GSCGTPBP4
PROTEIN STRUCTURE
Preparing viewer…
PDB8FKQ · 2.76 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.95LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.60 [0.39–0.95]
RankingsWhere RRP15 stands among ~20K protein-coding genes
  • #5,268of 20,598
    Most Researched91
  • #8,885of 17,882
    Most Constrained (LOEUF)0.95
Genes detectedRRP15
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The roles of RRP15 in nucleolar formation, ribosome biogenesis and checkpoint control in human cells.
PMID: 28099941
Oncotarget · 2017
1.00
2
RRP15 deficiency induces ribosome stress to inhibit colorectal cancer proliferation and metastasis via LZTS2-mediated β-catenin suppression.
PMID: 36750557
Cell Death Dis · 2023
0.90
3
CDC73 serves as a tumour-promoting factor in oesophageal cancer.
PMID: 38707440
Heliyon · 2024
0.80
4
Cinchonine-induced cell death in pancreatic cancer cells by downregulating RRP15.
PMID: 36682038
Cell Biol Int · 2023
0.70
5
Inhibition of Ribosomal RNA Processing 15 Homolog (RRP15) Suppressed Tumor Growth, Invasion and Epithelial to Mesenchymal Transition (EMT) of Colon Cancer.
PMID: 36834940
Int J Mol Sci · 2023
0.60