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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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KRR1
KRR1 small subunit processome component
Chromosome 12 · 12q21.2
NCBI Gene: 11103Ensembl: ENSG00000111615.15HGNC: HGNC:5176UniProt: Q13601
128PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmnucleolusmembranesmall-subunit processomeneurodegenerative diseasepolycystic ovary syndromepyelonephritisglaucoma
✦AI Summary

KRR1 encodes a small subunit processome component essential for ribosomal biogenesis. KRR1 localizes to the nucleolus and functions as a structural and catalytic component of the 90S pre-ribosome assembly complex 1. The protein coordinates early assembly events by working with the snoRNP complex snR30 and co-factors Utp23 and Kri1 to recruit ribosomal proteins and facilitate folding of the 40S central domain platform 2. KRR1 is essential for 18S rRNA processing and 40S ribosomal subunit maturation; depletion causes drastic reduction in functional 40S subunits due to defective pre-rRNA synthesis 1. The gene shows high expression in actively dividing cells, where efficient ribosome biogenesis is critical for translation capacity 3. Beyond its housekeeping ribosomal function, KRR1 has disease relevance: genetic variants at the KRR1 locus (rs1275468, 12q21.2) were identified in genome-wide association studies as potential susceptibility factors for polycystic ovary syndrome, though confirmation in non-European populations remains incomplete 4. Additionally, KRR1 is recognized as a tumor-associated autoantigen with elevated antibody response in breast cancer patients 5. The protein's conservation from primitive eukaryotes to humans underscores its fundamental role in cellular viability.

Sources cited
1
KRR1 localizes to nucleolus, is essential for 18S rRNA synthesis and 40S ribosomal subunit assembly
PMID: 11996121
2
KRR1 works with snR30 snoRNP and factors Utp23-Kri1 to coordinate 40S central domain assembly
PMID: 40399280
3
KRR1 function is critical for translation efficiency in rapidly proliferating cells
PMID: 37851577
4
KRR1 locus variant rs1275468 identified as potential PCOS susceptibility factor in GWAS
PMID: 28195137
5
KRR1 is a tumor-associated autoantigen with elevated antibody response in breast cancer patients
PMID: 27847402
6
KRR1 protein is responsible for ribosome biosynthesis in Giardia, a primitive eukaryote
PMID: 16982153
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.49Moderate
polycystic ovary syndromeOpen Targets
0.29Weak
pyelonephritisOpen Targets
0.18Weak
glaucomaOpen Targets
0.18Weak
glomerulonephritisOpen Targets
0.18Weak
cervical carcinomaOpen Targets
0.17Weak
HepatomegalyOpen Targets
0.16Weak
neoplasmOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.09Suggestive
insulinomaOpen Targets
0.09Suggestive
acute myeloid leukemiaOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
microphthalmia with limb anomaliesOpen Targets
0.08Suggestive
non-alcoholic steatohepatitisOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.08Suggestive
preeclampsiaOpen Targets
0.07Suggestive
mitochondrial DNA depletion syndrome 4aOpen Targets
0.07Suggestive
complex regional pain syndromeOpen Targets
0.07Suggestive
Abruptio PlacentaeOpen Targets
0.06Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MCCProtein interaction100%NOP14Protein interaction100%HEATR1Protein interaction100%UTP4Protein interaction100%UTP15Protein interaction100%UTP6Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Heart
33%
Brain
25%
Ovary
23%
Liver
19%
Lung
17%
Gene Interaction Network
Click a node to explore
KRR1MCCNOP14HEATR1UTP4UTP15UTP6
PROTEIN STRUCTURE
Preparing viewer…
PDB7MQ8 · 3.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.74LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.50 [0.34–0.74]
RankingsWhere KRR1 stands among ~20K protein-coding genes
  • #3,658of 20,598
    Most Researched128 · top quartile
  • #5,754of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedKRR1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors.
PMID: 35685361
Comput Struct Biotechnol J · 2022
1.00
2
H/ACA snR30 snoRNP guides independent 18S rRNA subdomain formation.
PMID: 40399280
Nat Commun · 2025
0.90
3
Knockdown of eIF3a alleviates pulmonary arterial hypertension by inhibiting endothelial-to-mesenchymal transition via TGFβ1/SMAD pathway.
PMID: 40346622
J Transl Med · 2025
0.80
4
The KRR1 gene encodes a protein required for 18S rRNA synthesis and 40S ribosomal subunit assembly in Saccharomyces cerevisiae.
PMID: 11996121
Acta Biochim Pol · 2000
0.70
5
Autoantibody Response to ZRF1 and KRR1 SEREX Antigens in Patients with Breast Tumors of Different Histological Types and Grades.
PMID: 27847402
Dis Markers · 2016
0.60