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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RTCB
RNA 2',3'-cyclic phosphate and 5'-OH ligase
Chromosome 22 · 22q12.3
NCBI Gene: 51493Ensembl: ENSG00000100220.13HGNC: HGNC:26935UniProt: Q9Y3I0
222PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein guanylyltransferase activityRNA ligase (GTP) activityRNA bindingprotein bindingneurodegenerative diseaselysosomal storage diseasebreast ductal carcinoma in situbreast cancer
✦AI Summary

RTCB (RNA 2',3'-cyclic phosphate and 5'-OH ligase) is a 3'-5' RNA ligase and catalytic subunit of the tRNA-splicing ligase complex that catalyzes phosphodiester bond formation between RNA fragments 1. In canonical tRNA splicing, RTCB functions downstream of tRNA endonucleases, ligating tRNA exons through a three-step GTP- and Mn(2+)-dependent mechanism requiring Archease-mediated active site guanylylation 1. RTCB also performs non-canonical splicing of XBP1 mRNA during endoplasmic reticulum stress, where IRE1/ERN1-generated exon ends are ligated to produce the active XBP1s transcription factor 2. Beyond these classical roles, RTCB participates in emerging biological processes: it ligates mRNA fragments in SOS splicing, a spliceosome-independent system protecting genes from DNA transposon-mediated disruption 3, and it enables in-cell circularization of exogenous RNAs for improved persistence in cell engineering applications 4. Dysregulation of RTCB has clinical significance in cancer, where the USP45-RTCB-DDX1 axis promotes tumorigenesis and chemoresistance through post-translational stabilization mechanisms, with elevated expression correlating with poor patient survival 5. These diverse functions establish RTCB as a fundamental regulator of RNA metabolism with implications for protein synthesis, cellular stress responses, and disease pathogenesis.

Sources cited
1
RTCB structure, GTP-dependent activation by Archease, and three-step RNA ligation mechanism
PMID: 38493148
2
RTCB as the only 3'-5' RNA ligase in human cells and its role in XBP1 splicing and tRNA maturation
PMID: 37935993
3
RTCB function in SOS splicing system for excising DNA transposons from mRNAs
PMID: 41372403
4
RTCB-mediated in-cell circularization of RNAs for improved persistence in cell engineering
PMID: 39187662
5
USP45-RTCB-DDX1 axis promoting tumorigenesis and chemoresistance with clinical poor prognosis correlation
PMID: 41468936
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.45Moderate
lysosomal storage diseaseOpen Targets
0.17Weak
breast ductal carcinoma in situOpen Targets
0.03Suggestive
breast cancerOpen Targets
0.02Suggestive
open-angle glaucomaOpen Targets
0.02Suggestive
glaucomaOpen Targets
0.02Suggestive
systemic juvenile idiopathic arthritisOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
colitisOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
lung carcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
viral diseaseOpen Targets
0.00Suggestive
breast neoplasmOpen Targets
0.00Suggestive
gliomaOpen Targets
0.00Suggestive
Marfan syndromeOpen Targets
0.00Suggestive
diabetes mellitusOpen Targets
0.00Suggestive
pancreatic ductal adenocarcinomaOpen Targets
0.00Suggestive
amebiasisOpen Targets
0.00Suggestive
X-linked hyper-IgM syndromeOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
RTRAFProtein interaction100%DDX1Protein interaction100%RTCAProtein interaction95%FAM98AProtein interaction90%ZBTB8OSProtein interaction81%DRG1Protein interaction78%
Tissue Expression6 tissues
Liver
100%
Heart
96%
Brain
92%
Lung
87%
Ovary
78%
Bone Marrow
59%
Gene Interaction Network
Click a node to explore
RTCBRTRAFDDX1RTCAFAM98AZBTB8OSDRG1
PROTEIN STRUCTURE
Preparing viewer…
PDB8ODO · 2.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.62LoF Tolerant
pLIⓘ
0.17Tolerant
Observed/Expected LoF0.42 [0.29–0.62]
RankingsWhere RTCB stands among ~20K protein-coding genes
  • #1,847of 20,598
    Most Researched222 · top 10%
  • #4,358of 17,882
    Most Constrained (LOEUF)0.62 · top quartile
Genes detectedRTCB
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Structural and mechanistic insights into activation of the human RNA ligase RTCB by Archease.
PMID: 38493148
Nat Commun · 2024
1.00
2
Insights into the structure and function of the RNA ligase RtcB.
PMID: 37935993
Cell Mol Life Sci · 2023
0.90
3
An RNA splicing system that excises DNA transposons from animal mRNAs.
PMID: 41372403
Nature · 2026
0.80
4
An RNA Repair Operon Regulated by Damaged tRNAs.
PMID: 33357439
Cell Rep · 2020
0.70
5
tRNA introns: Presence, processing, and purpose.
PMID: 31883233
Wiley Interdiscip Rev RNA · 2020
0.68