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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SBDS
SBDS ribosome maturation factor
Chromosome 7 Β· 7q11.21
NCBI Gene: 51119Ensembl: ENSG00000126524.13HGNC: HGNC:19440UniProt: A0A0S2Z5I7
115PubMed Papers
21Diseases
0Drugs
49Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cytoplasmmicrotubule bindingcytosolrRNA bindingShwachman-Diamond syndromeShwachman-Diamond syndrome 1aplastic anemiaacute myeloid leukemia
✦AI Summary

SBDS is a ribosomal maturation factor essential for 80S ribosome assembly and translation competence. 1 SBDS functions together with EFL1 to trigger GTP-dependent release of eIF6 from 60S pre-ribosomes in the cytoplasm, enabling ribosome activation and facilitating eIF6 recycling to the nucleus for 60S rRNA processing and nuclear export. 1 This mechanism is critical for maintaining normal protein synthesis levels. 2 Pathologically, SBDS mutations cause Shwachman-Diamond syndrome (SDS), an autosomal recessive ribosomopathy characterized by exocrine pancreatic deficiency, bone marrow failure with neutropenia, and severe predisposition to myeloid malignancies. 1 Approximately 90% of clinical SDS cases carry SBDS mutations. 2 The disease results from impaired ribosomal maturation and inability to evict eIF6 from the 60S subunit. 1 Clinically, SDS patients face extremely poor outcomes when developing myeloid malignancies due to high treatment-related toxicities and refractory disease. 1 Recent molecular advances reveal that somatic EIF6 inactivation can provide ribosomal rescue, while biallelic TP53 mutations increase leukemogenic potential. 1 Single-cell DNA sequencing can detect premalignant TP53-mutated clones before clinical diagnosis, enabling earlier hematopoietic stem cell transplantation when most effective. 1

Sources cited
1
SBDS function in eIF6 release from 60S ribosomal subunits, SDS pathobiology, myeloid malignancy predisposition, somatic mutations, and molecular surveillance
PMID: 36542827
2
SBDS mutations in ~90% of SDS patients, ribosomal role, and normal protein synthesis requirement
PMID: 16822460
3
SDS clinical features, bone marrow phenotype, and disease genetics
PMID: 16047374
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
Shwachman-Diamond syndromeOpen Targets
0.83Strong
Shwachman-Diamond syndrome 1Open Targets
0.75Strong
aplastic anemiaOpen Targets
0.57Moderate
acute myeloid leukemiaOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.53Moderate
myelodysplastic syndromeOpen Targets
0.46Moderate
Menkes diseaseOpen Targets
0.46Moderate
minimally differentiated acute myeloblastic leukemiaOpen Targets
0.46Moderate
Intellectual disabilityOpen Targets
0.44Moderate
anodontiaOpen Targets
0.41Moderate
Deeply set eyeOpen Targets
0.41Moderate
microcephalyOpen Targets
0.41Moderate
Short statureOpen Targets
0.41Moderate
SplenomegalyOpen Targets
0.41Moderate
hemangioblastomaOpen Targets
0.37Weak
smoking initiationOpen Targets
0.32Weak
hepatocellular carcinomaOpen Targets
0.28Weak
lung carcinomaOpen Targets
0.28Weak
melanomaOpen Targets
0.28Weak
lung adenocarcinomaOpen Targets
0.28Weak
Shwachman-Diamond syndrome 1UniProt
Pathogenic Variants49
NM_016038.4(SBDS):c.258+2T>CPathogenic
Aplastic anemia, susceptibility to|Shwachman-Diamond syndrome 1|not provided|not specified|Inborn genetic diseases|Microcephaly;Short stature;Splenomegaly;Deeply set eye;Agenesis of permanent teeth|Shwachman syndrome|Shwachman-Diamond syndrome 1;Aplastic anemia|Aplastic anemia|SBDS-related disorder|Lymphoma|Ovarian serous cystadenocarcinoma|Thyroid cancer, nonmedullary, 1|Acute myeloid leukemia|Familial pancreatic carcinoma|Hepatocellular carcinoma|Nonpapillary renal cell carcinoma|Intellectual disability|Uterine corpus endometrial carcinoma|Colon adenocarcinoma|Malignant tumor of urinary bladder|Malignant tumor of esophagus|Cervical cancer|Ovarian cancer
β˜…β˜…β˜†β˜†2025
NM_016038.4(SBDS):c.107del (p.Val36fs)Pathogenic
Aplastic anemia|Shwachman-Diamond syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 36
NM_016038.4(SBDS):c.183_184delinsCT (p.Lys62Ter)Pathogenic
Shwachman-Diamond syndrome 1|not provided|Inborn genetic diseases|Aplastic anemia|Shwachman-Diamond syndrome 1;Aplastic anemia|Shwachman syndrome|SBDS-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 62
NM_016038.4(SBDS):c.184A>T (p.Lys62Ter)Pathogenic
not provided|Short stature;Deeply set eye;Splenomegaly;Agenesis of permanent teeth;Microcephaly|Shwachman-Diamond syndrome 1|Intellectual disability|Inborn genetic diseases|Aplastic anemia;Shwachman-Diamond syndrome 1|Shwachman syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 62
NM_016038.4(SBDS):c.258+1G>CPathogenic
Shwachman-Diamond syndrome 1|not provided|Shwachman-Diamond syndrome 1;Aplastic anemia|Inborn genetic diseases|Aplastic anemia
β˜…β˜…β˜†β˜†2025
NM_016038.4(SBDS):c.307_308del (p.Gln103fs)Pathogenic
Aplastic anemia|Aplastic anemia;Shwachman-Diamond syndrome 1|Shwachman-Diamond syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 103
NM_016038.4(SBDS):c.13del (p.Thr5fs)Pathogenic
not provided|Shwachman-Diamond syndrome 1|Aplastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 5
NM_016038.4(SBDS):c.297_300del (p.Glu99fs)Pathogenic
Shwachman-Diamond syndrome 1|not provided|Shwachman-Diamond syndrome 1;Aplastic anemia|Aplastic anemia|SBDS-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 99
NM_016038.4(SBDS):c.624+1G>ALikely pathogenic
Aplastic anemia|Shwachman-Diamond syndrome 1
β˜…β˜…β˜†β˜†2025
NM_016038.4(SBDS):c.428C>T (p.Ser143Leu)Likely pathogenic
Aplastic anemia|Shwachman-Diamond syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 143
NM_016038.4(SBDS):c.652C>T (p.Arg218Ter)Pathogenic
Shwachman-Diamond syndrome 1|not provided|Aplastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 218
NM_016038.4(SBDS):c.452_453dup (p.Gln152fs)Likely pathogenic
Shwachman-Diamond syndrome 1|Aplastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 152
NM_016038.4(SBDS):c.98A>C (p.Lys33Thr)Pathogenic
Shwachman-Diamond syndrome 1|Aplastic anemia
β˜…β˜…β˜†β˜†2024β†’ Residue 33
NM_016038.4(SBDS):c.18del (p.Thr7fs)Pathogenic
Shwachman-Diamond syndrome 1|Aplastic anemia
β˜…β˜…β˜†β˜†2023β†’ Residue 7
NM_016038.4(SBDS):c.95A>G (p.Tyr32Cys)Likely pathogenic
not provided|Aplastic anemia
β˜…β˜…β˜†β˜†2023β†’ Residue 32
NM_016038.4(SBDS):c.120del (p.Ser41fs)Pathogenic
Shwachman-Diamond syndrome 1|not provided|Shwachman-Diamond syndrome 1;Aplastic anemia|Aplastic anemia
β˜…β˜…β˜†β˜†2023β†’ Residue 41
NM_016038.4(SBDS):c.129-2A>GPathogenic
Shwachman-Diamond syndrome 1
β˜…β˜†β˜†β˜†2025
NM_016038.4(SBDS):c.123del (p.Ser41fs)Pathogenic
Shwachman-Diamond syndrome 1
β˜…β˜†β˜†β˜†2025β†’ Residue 41
NM_016038.4(SBDS):c.187G>A (p.Gly63Ser)Likely pathogenic
Shwachman-Diamond syndrome 1
β˜…β˜†β˜†β˜†2025β†’ Residue 63
NM_016038.4(SBDS):c.566del (p.Lys189fs)Likely pathogenic
Shwachman-Diamond syndrome 1
β˜…β˜†β˜†β˜†2024β†’ Residue 189
View on ClinVar β†—
Related Genes
UBA52Protein interaction93%RPL37AProtein interaction93%RPL11Protein interaction90%RPL4Protein interaction90%RPS19Protein interaction87%EIF6Protein interaction86%
Tissue Expression6 tissues
Heart
100%
Brain
82%
Bone Marrow
65%
Lung
51%
Liver
39%
Ovary
38%
Gene Interaction Network
Click a node to explore
SBDSUBA52RPL37ARPL11RPL4RPS19EIF6
PROTEIN STRUCTURE
Preparing viewer…
PDB5AN9 Β· 3.30 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.08LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.74 [0.51–1.08]
RankingsWhere SBDS stands among ~20K protein-coding genes
  • #4,134of 20,598
    Most Researched115 Β· top quartile
  • #1,353of 5,498
    Most Pathogenic Variants49 Β· top quartile
  • #10,960of 17,882
    Most Constrained (LOEUF)1.08
Genes detectedSBDS
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Sleep-related breathing disorders and pulmonary hypertension.
PMID: 32747397
Eur Respir J Β· 2021
1.00
2
Predisposition to myeloid malignancies in Shwachman-Diamond syndrome: biological insights and clinical advances.
PMID: 36542827
Blood Β· 2023
0.90
3
A landscape of germ line mutations in a cohort of inherited bone marrow failure patients.
PMID: 29146883
Blood Β· 2018
0.80
4
Congenital neutropenia.
PMID: 20008220
Hematology Am Soc Hematol Educ Program Β· 2009
0.70
5
PMID: 24624459
0.60