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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SCARB2
scavenger receptor class B member 2
Chromosome 4 Β· 4q21.1
NCBI Gene: 950Ensembl: ENSG00000138760.11HGNC: HGNC:1665UniProt: A0A1W2PRF6
148PubMed Papers
21Diseases
0Drugs
38Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneReceptor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
lysosomal membraneenzyme bindingfocal adhesioncargo receptor activityaction myoclonus-renal failure syndromeAction myoclonus - renal failure syndromeProgressive myoclonic epilepsygenetic disorder
✦AI Summary

SCARB2 (scavenger receptor class B member 2), also known as LIMP-2, is a lysosomal integral membrane protein with diverse cellular functions. Functionally, SCARB2 acts as a lysosomal cholesterol transporter, binding and shuttling cholesterol across the transglycocalyx tunnel within lysosomes alongside NPC1 1. Additionally, SCARB2 serves as a cellular receptor for enteroviruses, including enterovirus 71 and Coxsackievirus A16, which cause hand, foot, and mouth disease 2. Beyond viral infection, SCARB2 is a cargo receptor involved in lipophagyβ€”selective autophagy of lipid dropletsβ€”and mediates cholesterol efflux in macrophage foam cells 3. Mechanistically, SCARB2 regulates lipid and cholesterol metabolism through multiple pathways. In hepatocellular carcinoma, SCARB2 binding to MYC promotes its acetylation and transcriptional activity, driving cancer stem cell properties 4. In obesity-related breast cancer, glutathione directly binds SCARB2 at lysosomes, recruiting mTORC1 through ARF1 to activate mTOR signaling 5. SCARB2 knockdown in adipocytes alters lipid composition, reducing triacylglycerols while modulating phosphatidylcholine and ceramide levels 6. Clinically, SCARB2 variants (rs8475, rs6812193) associate with Parkinson's disease risk, particularly sporadic PD, though they do not modify disease onset 7. SCARB2 expression is reduced in GBA-associated parkinsonism 7. SCARB2 is also implicated in progressive myoclonic epilepsy type 4. These associations suggest SCARB2 dysfunction impairs lysosomal function and neuronal homeostasis.

Sources cited
1
SCARB2/LIMP-2 is a lysosomal membrane protein that transports cholesterol through a transglycocalyx tunnel
PMID: 32413315
2
SCARB2 serves as a cellular receptor for Coxsackievirus A16 and enterovirus 71, mediating viral entry
PMID: 40143350
3
SCARB2 is involved in lipophagy and cholesterol efflux in macrophage foam cells
PMID: 33590792
4
SCARB2 binding to MYC promotes its acetylation and enhances MYC transcriptional activity, driving HCC stem cell properties
PMID: 37739936
5
Glutathione binds to SCARB2 at lysosomes, recruiting mTORC1 through ARF1 to activate mTOR signaling in breast cancer
PMID: 39442522
6
SCARB2 knockdown reduces lipid droplet accumulation and alters lipid composition in adipocytes
PMID: 40127054
7
SCARB2 variants rs8475 and rs6812193 associate with Parkinson's disease risk; expression is reduced in GBA-associated PD
PMID: 33227372
Disease Associationsβ“˜21
action myoclonus-renal failure syndromeOpen Targets
0.78Strong
Action myoclonus - renal failure syndromeOpen Targets
0.65Moderate
Progressive myoclonic epilepsyOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.47Moderate
Rolandic epilepsyOpen Targets
0.42Moderate
self-limited epilepsy with centrotemporal spikesOpen Targets
0.42Moderate
progressive myoclonus epilepsyOpen Targets
0.38Weak
Unverricht-Lundborg diseaseOpen Targets
0.37Weak
Gaucher disease type 1Open Targets
0.37Weak
Unverricht-Lundborg syndromeOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.32Weak
diabetes mellitusOpen Targets
0.32Weak
Alzheimer diseaseOpen Targets
0.32Weak
atrial fibrillationOpen Targets
0.31Weak
iron metabolism diseaseOpen Targets
0.31Weak
response to statinOpen Targets
0.27Weak
ovarian dysfunctionOpen Targets
0.26Weak
focal segmental glomerulosclerosisOpen Targets
0.12Weak
obesityOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.08Suggestive
Epilepsy, progressive myoclonic 4, with or without renal failureUniProt
Pathogenic Variants38
NM_005506.4(SCARB2):c.434_435dup (p.Trp146fs)Pathogenic
Action myoclonus-renal failure syndrome|not provided|Progressive myoclonic epilepsy|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 146
NM_005506.4(SCARB2):c.361C>T (p.Arg121Ter)Pathogenic
not provided|Action myoclonus-renal failure syndrome|Progressive myoclonic epilepsy
β˜…β˜…β˜†β˜†2025β†’ Residue 121
NM_005506.4(SCARB2):c.862C>T (p.Gln288Ter)Pathogenic
Action myoclonus-renal failure syndrome|not provided|Progressive myoclonic epilepsy
β˜…β˜…β˜†β˜†2024β†’ Residue 288
NM_005506.4(SCARB2):c.1002dup (p.Ile335fs)Pathogenic
Progressive myoclonic epilepsy|Action myoclonus-renal failure syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 335
NM_005506.4(SCARB2):c.88C>T (p.Gln30Ter)Pathogenic
Progressive myoclonic epilepsy|Action myoclonus-renal failure syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 30
NM_005506.4(SCARB2):c.956del (p.Leu319fs)Pathogenic
Progressive myoclonic epilepsy|Action myoclonus-renal failure syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 319
NM_005506.4(SCARB2):c.235del (p.Glu79fs)Pathogenic
Progressive myoclonic epilepsy|Action myoclonus-renal failure syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 79
NM_005506.4(SCARB2):c.704+1G>APathogenic
Action myoclonus-renal failure syndrome|Progressive myoclonic epilepsy
β˜…β˜…β˜†β˜†2022
NM_005506.4(SCARB2):c.1270C>T (p.Arg424Ter)Pathogenic
Action myoclonus-renal failure syndrome|Progressive myoclonic epilepsy|Inborn genetic diseases
β˜…β˜…β˜†β˜†2022β†’ Residue 424
NM_005506.4(SCARB2):c.1240-2A>CLikely pathogenic
Action myoclonus-renal failure syndrome
β˜…β˜†β˜†β˜†2025
NM_005506.4(SCARB2):c.1030C>T (p.Gln344Ter)Pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2025β†’ Residue 344
NM_005506.4(SCARB2):c.1113+1G>TLikely pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2024
NM_005506.4(SCARB2):c.994+1G>TPathogenic
Action myoclonus-renal failure syndrome
β˜…β˜†β˜†β˜†2024
NM_005506.4(SCARB2):c.117+2T>CLikely pathogenic
Action myoclonus-renal failure syndrome
β˜…β˜†β˜†β˜†2024
NM_005506.4(SCARB2):c.1187+1G>ALikely pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2024
NM_005506.4(SCARB2):c.1353_1357del (p.Leu451fs)Likely pathogenic
Action myoclonus-renal failure syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 451
NM_005506.4(SCARB2):c.666_670del (p.Tyr222_Asn224delinsTer)Pathogenic
Action myoclonus-renal failure syndrome|Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2024β†’ Residue 222
NC_000004.12:g.76163382CT[1]Pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2023
NM_005506.4(SCARB2):c.995-16_1062delinsGLikely pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2023
NM_005506.4(SCARB2):c.1240-2A>GLikely pathogenic
Progressive myoclonic epilepsy
β˜…β˜†β˜†β˜†2023
View on ClinVar β†—
Related Genes
APOEProtein interaction100%TLR6Protein interaction100%TLR1Protein interaction100%CLEC7AProtein interaction100%TLR2Protein interaction100%CD63Protein interaction99%
Tissue Expression6 tissues
Brain
100%
Liver
57%
Heart
55%
Lung
55%
Ovary
42%
Bone Marrow
21%
Gene Interaction Network
Click a node to explore
SCARB2APOETLR6TLR1CLEC7ATLR2CD63
PROTEIN STRUCTURE
Preparing viewer…
PDB4Q4F Β· 2.80 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.68LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.49 [0.35–0.68]
RankingsWhere SCARB2 stands among ~20K protein-coding genes
  • #3,071of 20,598
    Most Researched148 Β· top quartile
  • #1,585of 5,498
    Most Pathogenic Variants38
  • #5,097of 17,882
    Most Constrained (LOEUF)0.68
Genes detectedSCARB2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Cholesterol Handling in Lysosomes and Beyond.
PMID: 32413315
Trends Cell Biol Β· 2020
1.00
2
SCARB2 drives hepatocellular carcinoma tumor initiating cells via enhanced MYC transcriptional activity.
PMID: 37739936
Nat Commun Β· 2023
0.90
3
Adipocyte-derived glutathione promotes obesity-related breast cancer by regulating the SCARB2-ARF1-mTORC1 complex.
PMID: 39442522
Cell Metab Β· 2025
0.80
4
Identification of novel lipid droplet factors that regulate lipophagy and cholesterol efflux in macrophage foam cells.
PMID: 33590792
Autophagy Β· 2021
0.70
5
A New Human SCARB2 Knock-In Mouse Model for Studying Coxsackievirus A16 and Its Neurotoxicity.
PMID: 40143350
Viruses Β· 2025
0.60