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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SCGB3A1
secretoglobin family 3A member 1
Chromosome 5 · 5q35.3
NCBI Gene: 92304Ensembl: ENSG00000161055.5HGNC: HGNC:18384UniProt: Q96QR1
47PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular exosomeGO:0005615protein bindingpositive regulation of myoblast fusionSplenomegalyneoplasmlung adenocarcinomarhabdomyolysis
✦AI Summary

SCGB3A1 (secretoglobin family 3A member 1) is a secreted cytokine-like protein with tumor suppressor properties that functions primarily in airway epithelium and other tissues. Expression is regulated by the transcription factor NF-Y and controlled by CpG methylation in its promoter region 1. SCGB3A1 defines a subset of secretory cells in conducting airways alongside related secretoglobins, with expression patterns altered in airway disease 2. Clinically, SCGB3A1 emerges as a significant biomarker for interstitial lung disease (ILA), with elevated blood levels associated with ILA presence (OR 2.43) and progression, showing predictive potential in machine-learning models 3. In lung adenocarcinoma, SCGB3A1 functions as a tumor suppressor; high expression correlates with improved prognosis and enhanced immune cell infiltration, with overexpression suppressing cell proliferation, migration, and invasion 4. SCGB3A1 expression is downregulated in specific COPD patient communities characterized by immune activation and small airway changes 5. In metastatic disease, SCGB3A1-expressing epithelial cells promote breast cancer liver metastasis through CD74-APP interactions with fibroblasts 6. Genetic variants in SCGB3A1 promoter and intronic regions appear protective against nasal polyposis 7, suggesting immunoregulatory functions across diverse airway pathologies.

Sources cited
1
SCGB3A1 expression regulated by NF-Y transcription factor and CpG methylation in promoter region
PMID: 18194566
2
SCGB3A1 defines secretory cell subsets in airways; expression altered in airway disease
PMID: 12406855
3
SCGB3A1 is major blood biomarker for interstitial lung abnormalities and progression with strong predictive value
PMID: 35438610
4
SCGB3A1 acts as tumor suppressor in lung adenocarcinoma with high expression improving prognosis and enhancing immune infiltration
PMID: 40691840
5
SCGB3A1 downregulation in specific COPD patient community with immune activation and altered small airway pathology
PMID: 38626356
6
SCGB3A1-expressing epithelial cells promote breast cancer liver metastasis through fibroblast interactions
PMID: 40357856
7
SCGB3A1 genetic variants associated with protection against nasal polyposis
PMID: 24710847
Disease Associationsⓘ20
SplenomegalyOpen Targets
0.17Weak
neoplasmOpen Targets
0.10Suggestive
lung adenocarcinomaOpen Targets
0.08Suggestive
rhabdomyolysisOpen Targets
0.08Suggestive
lung diseaseOpen Targets
0.07Suggestive
mitochondrial DNA depletion syndrome 4aOpen Targets
0.07Suggestive
breast carcinomaOpen Targets
0.06Suggestive
coronary atherosclerosisOpen Targets
0.05Suggestive
breast cancerOpen Targets
0.04Suggestive
lung cancerOpen Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
Alzheimer diseaseOpen Targets
0.03Suggestive
azoospermiaOpen Targets
0.03Suggestive
Abnormality of the skeletal systemOpen Targets
0.03Suggestive
asthmaOpen Targets
0.03Suggestive
nasopharyngeal carcinomaOpen Targets
0.03Suggestive
pelvic organ prolapseOpen Targets
0.03Suggestive
gastric cancerOpen Targets
0.03Suggestive
prostate cancerOpen Targets
0.03Suggestive
prostate carcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SCGB1A1Protein interaction87%BPIFB1Protein interaction73%TFAP2EShared pathway33%BRICD5Shared pathway33%NAIF1Shared pathway33%GKN2Shared pathway33%
Tissue Expression6 tissues
Lung
100%
Liver
3%
Bone Marrow
2%
Ovary
1%
Brain
0%
Heart
0%
Gene Interaction Network
Click a node to explore
SCGB3A1SCGB1A1BPIFB1TFAP2EBRICD5NAIF1GKN2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q96QR1
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.90LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.29 [0.71–1.90]
RankingsWhere SCGB3A1 stands among ~20K protein-coding genes
  • #9,271of 20,598
    Most Researched47
  • #17,243of 17,882
    Most Constrained (LOEUF)1.90
Genes detectedSCGB3A1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
The Proteomic Profile of Interstitial Lung Abnormalities.
PMID: 35438610
Am J Respir Crit Care Med · 2022
1.00
2
SCGB3A1-Epi and KLK10-Epi Crosstalk With Fibroblasts Promotes Liver Metastasis of Breast Cancer and Pancreatic Ductal Adenocarcinoma.
PMID: 40357856
Cancer Med · 2025
0.90
3
Regulation of mouse Scgb3a1 gene expression by NF-Y and association of CpG methylation with its tissue-specific expression.
PMID: 18194566
BMC Mol Biol · 2008
0.80
4
Lung Tissue Multilayer Network Analysis Uncovers the Molecular Heterogeneity of Chronic Obstructive Pulmonary Disease.
PMID: 38626356
Am J Respir Crit Care Med · 2024
0.70
5
Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways.
PMID: 12406855
Am J Respir Crit Care Med · 2002
0.60