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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SGPL1
sphingosine-1-phosphate lyase 1
Chromosome 10 Β· 10q22.1
NCBI Gene: 8879Ensembl: ENSG00000166224.19HGNC: HGNC:10817UniProt: A0A8V8TN35
144PubMed Papers
21Diseases
0Drugs
29Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingsphinganine-1-phosphate aldolase activityfatty acid metabolic processceramide metabolic processnephrotic syndrome 14pterin-4 alpha-carbinolamine dehydratase 1 deficiencynephrotic syndromesteroid-resistant nephrotic syndrome
✦AI Summary

SGPL1 (sphingosine-1-phosphate lyase 1) catalyzes the terminal degradation of sphingosine-1-phosphate (S1P) and other phosphorylated sphingoid bases into fatty aldehydes and phosphoethanolamine, representing the final irreversible step in sphingolipid catabolism 1. This enzymatic activity is critical for maintaining systemic S1P homeostasis and regulating cellular lipid composition. SGPL1 plays dual roles in both pro-inflammatory and protective contexts: it elevates stress-induced ceramide production and apoptosis, while also modulating pro-inflammatory responses and neutrophil trafficking. In the lungs, SGPL1 activity counters pathological fibrosis by degrading elevated S1P levels that otherwise promote profibrotic TGF-Ξ² signaling 2, 1. Clinically, biallelic SGPL1 mutations cause sphingosine phosphate lyase insufficiency syndrome (SPLIS/RENI syndrome), a severe multisystem disorder. Disease manifestations include steroid-resistant nephrotic syndrome typically presenting before age 1 year, primary adrenal insufficiency, neurological abnormalities, ichthyosis, immunodeficiency, and amyloidosis 3, 4, 5. Prognosis is generally poor, with many patients progressing to chr10 kidney disease requiring renal replacement therapy 3. SGPL1 also serves as a potential diagnostic biomarker in spinal cord injury-associated neuroinflammation 6. AAV9-mediated SGPL1 gene therapy shows therapeutic promise for idiopathic pulmonary fibrosis 2.

Sources cited
1
SGPL1 enzyme activity degrades S1P, and AAV9-SGPL1 therapy decreases lung fibrosis by reducing S1P-mediated TGF-Ξ² signaling in IPF models
PMID: 38332723
2
SGPL1 (S1P lyase) catalyzes S1P catabolism and plays critical roles in pulmonary fibrosis pathology; SGPL1 deletion potentiates bleomycin-induced fibrosis while overexpression attenuates it
PMID: 25446881
3
Biallelic SGPL1 mutations cause nephrotic syndrome typically before age 1, adrenal insufficiency, neurological findings, and ichthyosis with poor prognosis
PMID: 35748945
4
SGPL1 mutations cause primary adrenal insufficiency with potential multisystemic manifestations including neurological abnormalities detectable by brain MRI
PMID: 30517686
5
SGPL1 mutations disrupt S1P homeostasis and can lead to multisystem amyloidosis involving liver, heart, and kidneys
PMID: 41496093
6
SGPL1 deficiency (SPLIS) presents as multisystemic disease with steroid-resistant nephrotic syndrome, adrenal insufficiency, immunodeficiency, and neurological problems
PMID: 37377976
7
SGPL1 is identified as a potential diagnostic biomarker associated with macrophage-microglia cells in spinal cord injury
PMID: 41000385
Disease Associationsβ“˜21
nephrotic syndrome 14Open Targets
0.78Strong
pterin-4 alpha-carbinolamine dehydratase 1 deficiencyOpen Targets
0.55Moderate
nephrotic syndromeOpen Targets
0.55Moderate
steroid-resistant nephrotic syndromeOpen Targets
0.51Moderate
lymphopeniaOpen Targets
0.47Moderate
focal segmental glomerulosclerosisOpen Targets
0.46Moderate
ichthyosisOpen Targets
0.37Weak
Adrenal insufficiencyOpen Targets
0.37Weak
hydrops fetalisOpen Targets
0.37Weak
type 2 diabetes mellitusOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
intracranial hemorrhageOpen Targets
0.23Weak
hemoglobin E diseaseOpen Targets
0.17Weak
hyperphenylalaninemia due to tetrahydrobiopterin deficiencyOpen Targets
0.17Weak
diabetes mellitusOpen Targets
0.13Weak
cancerOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
Testicular regression syndromeOpen Targets
0.07Suggestive
azoospermiaOpen Targets
0.07Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.07Suggestive
RENI syndromeUniProt
Pathogenic Variants29
NM_003901.4(SGPL1):c.993C>G (p.Tyr331Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 331
NM_003901.4(SGPL1):c.665G>A (p.Arg222Gln)Pathogenic
Nephrotic syndrome 14|not provided|Nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 222
NM_003901.4(SGPL1):c.1247A>G (p.Tyr416Cys)Likely pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 416
NM_003901.4(SGPL1):c.1483C>T (p.Arg495Ter)Pathogenic
Nephrotic syndrome 14|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 495
NM_003901.4(SGPL1):c.1513C>T (p.Arg505Ter)Pathogenic
Nephrotic syndrome 14
β˜…β˜…β˜†β˜†2024β†’ Residue 505
NM_003901.4(SGPL1):c.1266_1267del (p.Gln422fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 422
NM_003901.4(SGPL1):c.395A>G (p.Glu132Gly)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 132
NM_003901.4(SGPL1):c.134G>A (p.Trp45Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 45
NM_003901.4(SGPL1):c.924C>A (p.Tyr308Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 308
NM_003901.4(SGPL1):c.184del (p.Gln62fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 62
NM_003901.4(SGPL1):c.616-1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2024
NM_003901.4(SGPL1):c.146G>A (p.Trp49Ter)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2024β†’ Residue 49
NM_003901.4(SGPL1):c.1588dup (p.Gln530fs)Likely pathogenic
Nephrotic syndrome 14
β˜…β˜†β˜†β˜†2024β†’ Residue 530
NM_003901.4(SGPL1):c.517dup (p.Leu173fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 173
NM_003901.4(SGPL1):c.166G>T (p.Gly56Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 56
NM_003901.4(SGPL1):c.397_401del (p.Tyr133fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 133
NM_003901.4(SGPL1):c.423del (p.Glu142fs)Pathogenic
Nephrotic syndrome 14
β˜…β˜†β˜†β˜†2023β†’ Residue 142
NM_003901.4(SGPL1):c.868T>C (p.Phe290Leu)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 290
NM_003901.4(SGPL1):c.991_1001del (p.Tyr331fs)Likely pathogenic
Nephrotic syndrome 14
β˜…β˜†β˜†β˜†2023β†’ Residue 331
NM_003901.4(SGPL1):c.705-1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
View on ClinVar β†—
Related Genes
SPHK2Protein interaction99%PLPP2Protein interaction99%PLPP3Protein interaction99%SPHK1Protein interaction99%SGPP1Protein interaction99%S1PR2Protein interaction96%
Tissue Expression6 tissues
Brain
100%
Liver
90%
Ovary
38%
Lung
36%
Heart
30%
Bone Marrow
23%
Gene Interaction Network
Click a node to explore
SGPL1SPHK2PLPP2PLPP3SPHK1SGPP1S1PR2
PROTEIN STRUCTURE
Preparing viewer…
PDB8AYF Β· 1.84 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.71LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.50 [0.36–0.71]
RankingsWhere SGPL1 stands among ~20K protein-coding genes
  • #3,178of 20,598
    Most Researched144 Β· top quartile
  • #1,840of 5,498
    Most Pathogenic Variants29
  • #5,445of 17,882
    Most Constrained (LOEUF)0.71
Genes detectedSGPL1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Gene therapy with AAV9-SGPL1 in an animal model of lung fibrosis.
PMID: 38332723
J Pathol Β· 2024
0.90
3
Diagnosis and treatment of multisystem amyloidosis associated with SGPL1 mutation: A case report and review of the literature.
PMID: 41496093
Medicine (Baltimore) Β· 2026
0.80
4
Combined novel homozygous variants in both
PMID: 37377976
Front Immunol Β· 2023
0.70
5
A rare cause of nephrotic syndrome-sphingosine-1-phosphate lyase (SGPL1) deficiency: 6 cases and a review of the literature.
PMID: 35748945
Pediatr Nephrol Β· 2023
0.60