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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SLC30A3
solute carrier family 30 member 3
Chromosome 2 · 2p23.3
NCBI Gene: 7781Ensembl: ENSG00000115194.12HGNC: HGNC:11014UniProt: B4DXX8
36PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
zinc ion transmembrane transporter activitycytoplasmlysosomal membranelate endosomeFebrile seizure (within the age range of 3 months to 6 years)Alzheimer diseasemedical procedureosteoarthritis, knee
✦AI Summary

SLC30A3 encodes zinc transporter 3 (ZnT3), a proton-coupled zinc ion antiporter that primarily functions to transport zinc from the cytoplasm into synaptic vesicles and other intracellular compartments 1. The protein is localized to synaptic vesicles in glutamate synapses and plays a crucial role in cellular zinc homeostasis, particularly in the brain 2. ZnT3 mediates zinc uptake into vesicles in neurons and is involved in maintaining zinc-glutamate homeostasis 3. The transporter also appears to function in oocytes, where it facilitates zinc ion accumulation, though its loss does not impair fertility 4. SLC30A3 exhibits protective functions against cellular stress, including endoplasmic reticulum stress, through ERK1/2 pathway activation 5. Genetic variants in SLC30A3 influence serum zinc concentrations and show gender-specific associations with schizophrenia risk in females 672. The gene is consistently down-regulated in schizophrenia patients and may contribute to cognitive dysfunction 2. Additionally, SLC30A3 expression affects cancer cell sensitivity to cisplatin, with overexpression decreasing drug sensitivity 8. These findings highlight SLC30A3's importance in neurological function, cellular stress responses, and disease susceptibility.

Sources cited
1
SLC30A3 encodes a zinc transporter involved in zinc uptake into vesicles in neurons
PMID: 9521625
2
ZnT3 is localized to synaptic vesicles in glutamate synapses and is down-regulated in schizophrenia
PMID: 23849395
3
SLC30A3 is responsible for maintaining zinc-glutamate homeostasis
PMID: 39272182
4
ZnT3 plays a role in zinc ion accumulation in oocytes but is not essential for fertility
PMID: 39048372
5
SLC30A3 provides protection against endoplasmic reticulum stress through ERK1/2 activation
PMID: 27678294
6
Genetic variants in SLC30A3 influence serum zinc concentrations
PMID: 25249019
7
SLC30A3 variants show gender-specific association with schizophrenia in females
PMID: 27750116
8
SLC30A3 overexpression affects cancer cell sensitivity to cisplatin
PMID: 39596116
Disease Associationsⓘ20
Febrile seizure (within the age range of 3 months to 6 years)Open Targets
0.12Weak
Alzheimer diseaseOpen Targets
0.09Suggestive
medical procedureOpen Targets
0.07Suggestive
osteoarthritis, kneeOpen Targets
0.06Suggestive
FTH1-related iron overloadOpen Targets
0.06Suggestive
hemochromatosis type 5Open Targets
0.06Suggestive
zinc deficiency, transient neonatalOpen Targets
0.05Suggestive
glioblastoma multiformeOpen Targets
0.04Suggestive
ischemiaOpen Targets
0.04Suggestive
central nervous system cancerOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
isolated hyperferritinemiaOpen Targets
0.04Suggestive
schizophreniaOpen Targets
0.04Suggestive
Huntington diseaseOpen Targets
0.04Suggestive
Cerebral ischemiaOpen Targets
0.03Suggestive
obesityOpen Targets
0.03Suggestive
depressive disorderOpen Targets
0.03Suggestive
metabolic syndromeOpen Targets
0.03Suggestive
Cognitive impairmentOpen Targets
0.02Suggestive
multiple sclerosisOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
AP3D1Protein interaction80%SLC30A2Shared pathway80%SLC39A7Protein interaction72%SLC30A9Protein interaction59%SLC39A1Protein interaction57%SLC30A4Shared pathway57%
Tissue Expression6 tissues
Heart
100%
Brain
63%
Ovary
3%
Lung
2%
Liver
1%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SLC30A3AP3D1SLC30A2SLC39A7SLC30A9SLC39A1SLC30A4
PROTEIN STRUCTURE
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PDB9JJ1 · 2.72 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.82LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.57 [0.40–0.82]
RankingsWhere SLC30A3 stands among ~20K protein-coding genes
  • #10,867of 20,598
    Most Researched36
  • #6,984of 17,882
    Most Constrained (LOEUF)0.82
Genes detectedSLC30A3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SLC30A3 and SEP15 gene polymorphisms influence the serum concentrations of zinc and selenium in mature adults.
PMID: 25249019
Nutr Res · 2014
1.00
2
Mammalian zinc transporters.
PMID: 9521625
J Nutr · 1998
0.90
3
Common variants in the chromosome 2p23 region containing the SLC30A3 (ZnT3) gene are associated with schizophrenia in female but not male individuals in a large collection of European samples.
PMID: 27750116
Psychiatry Res · 2016
0.80
4
Forced Overexpression and Knockout Analysis of SLC30A and SLC39A Family Genes Suggests Their Involvement in Establishing Resistance to Cisplatin in Human Cancer Cells.
PMID: 39596116
Int J Mol Sci · 2024
0.70
5
Protective roles of SLC30A3 against endoplasmic reticulum stress via ERK1/2 activation.
PMID: 27678294
Biochem Biophys Res Commun · 2016
0.60