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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC30A10
solute carrier family 30 member 10
Chromosome 1 Β· 1q41
NCBI Gene: 55532Ensembl: ENSG00000196660.12HGNC: HGNC:25355UniProt: A0A8Q3WLF3
42PubMed Papers
21Diseases
0Drugs
10Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
Golgi apparatusplasma membraneepidermal growth factor receptor signaling pathwayearly endosome membraneCirrhosis-dystonia-polycythemia-hypermanganesemia syndromecirrhosis - dystonia - polycythemia - hypermanganesemia syndromenephrolithiasisbladder calculus
✦AI Summary

SLC30A10 is a calcium:manganese antiporter located at the plasma membrane that mediates manganese efflux coupled to calcium influx, functioning as the primary mechanism for manganese homeostasis 1. The transporter is essential for preventing intracellular manganese accumulation, as excessive manganese induces oxidative stress, mitochondrial dysfunction, and apoptosis 1. SLC30A10 may also function as a zinc ion transporter, regulating intracellular zinc homeostasis 2. Transcriptional regulation of SLC30A10 occurs through hypoxia-inducible factors (HIF), where elevated manganese activates HIF1Ξ±/HIF2Ξ± to upregulate SLC30A10 expression while simultaneously inducing NR4A1, which represses SLC30A10 to prevent manganese deficiency 3. The transporter contains a critical manganese-binding site at aspartate 40 (D40), with disease-associated mutations at this residue abolishing transport function 4. Bi-allelic SLC30A10 mutations cause hypermanganesemia with dystonia 1 (HMNDYT1), characterized by progressive dystonia with disease onset typically around 2.5 years of age, alongside liver disease and polycythemia 15. Common polymorphisms, particularly T95I, may influence manganese neurotoxicity susceptibility, though functional studies suggest this variant retains near-normal transporter activity 67. Early diagnosis through blood manganese levels and brain MRI enables timely therapeutic intervention 1.

Sources cited
1
SLC30A10 is a manganese efflux transporter; mutations cause hypermanganesemia with dystonia 1; disease onset and diagnostic approaches
PMID: 31089831
2
HIF-dependent transcriptional regulation of SLC30A10; NR4A1 repression mechanism; manganese-induced homeostatic response
PMID: 40945722
3
SLC30A10 deficiency produces predominantly dystonic phenotype with median onset at 2.5 years; dystonia-parkinsonism genotype-phenotype correlations
PMID: 40362326
4
SLC30A10 is part of SLC30 family with zinc ion transporter activity; dysregulation affects cellular processes
PMID: 35154468
5
Cryo-EM structure reveals manganese-binding site in SLC30A10; D40 residue critical for manganese binding and transport
PMID: 41022720
6
T95I polymorphism retains manganese efflux activity comparable to wild-type SLC30A10
PMID: 36414535
7
Hepatic SLC30A10 expression is sufficient to normalize manganese levels and attenuate disease phenotypes; T95I variant function in vivo
PMID: 38336290
Disease Associationsβ“˜21
Cirrhosis-dystonia-polycythemia-hypermanganesemia syndromeOpen Targets
0.80Strong
cirrhosis - dystonia - polycythemia - hypermanganesemia syndromeOpen Targets
0.74Strong
nephrolithiasisOpen Targets
0.48Moderate
bladder calculusOpen Targets
0.41Moderate
extrahepatic bile duct carcinomaOpen Targets
0.35Weak
ureterolithiasisOpen Targets
0.33Weak
urolithiasisOpen Targets
0.32Weak
diverticular diseaseOpen Targets
0.27Weak
androgenetic alopeciaOpen Targets
0.23Weak
glaucomaOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
splenic diseaseOpen Targets
0.14Weak
osteoarthritis, hipOpen Targets
0.13Weak
Abnormality of the skeletal systemOpen Targets
0.13Weak
chronic obstructive pulmonary diseaseOpen Targets
0.12Weak
total hip arthroplastyOpen Targets
0.12Weak
Inguinal herniaOpen Targets
0.11Weak
inflammatory bowel diseaseOpen Targets
0.10Suggestive
type 1 diabetes mellitusOpen Targets
0.10Suggestive
frozen shoulderOpen Targets
0.09Suggestive
Hypermanganesemia with dystonia 1UniProt
Pathogenic Variants10
NM_018713.3(SLC30A10):c.222C>G (p.Tyr74Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 74
NM_018713.3(SLC30A10):c.922C>T (p.Gln308Ter)Likely pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜…β˜†β˜†β˜†2024β†’ Residue 308
NM_018713.3(SLC30A10):c.134dup (p.Ser46fs)Likely pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜…β˜†β˜†β˜†2024β†’ Residue 46
NM_018713.3(SLC30A10):c.511C>T (p.Gln171Ter)Likely pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜…β˜†β˜†β˜†2024β†’ Residue 171
NM_018713.3(SLC30A10):c.585del (p.Thr196fs)Pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis|not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 196
NM_018713.3(SLC30A10):c.266T>C (p.Leu89Pro)Pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜†β˜†β˜†β˜†2012β†’ Residue 89
NM_018713.3(SLC30A10):c.314_322del (p.Ala105_Pro107del)Pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜†β˜†β˜†β˜†2012β†’ Residue 105
NM_018713.3(SLC30A10):c.507del (p.Pro170fs)Pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜†β˜†β˜†β˜†2012β†’ Residue 170
NM_018713.3(SLC30A10):c.1235del (p.Gln412fs)Pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜†β˜†β˜†β˜†2012β†’ Residue 412
NM_018713.3(SLC30A10):c.392T>G (p.Leu131Arg)Likely pathogenic
Hypermanganesemia with dystonia, polycythemia, and cirrhosis
β˜†β˜†β˜†β˜†β†’ Residue 131
View on ClinVar β†—
Related Genes
GAD2Protein interaction93%PTPRNProtein interaction93%INSProtein interaction93%SLC30A6Protein interaction86%INSM2Protein interaction79%SLC39A14Protein interaction79%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
6%
Brain
3%
Ovary
2%
Heart
1%
Lung
0%
Gene Interaction Network
Click a node to explore
SLC30A10GAD2PTPRNINSSLC30A6INSM2SLC39A14
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q6XR72
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.99LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.58 [0.36–0.99]
RankingsWhere SLC30A10 stands among ~20K protein-coding genes
  • #9,942of 20,598
    Most Researched42
  • #2,879of 5,498
    Most Pathogenic Variants10
  • #9,505of 17,882
    Most Constrained (LOEUF)0.99
Genes detectedSLC30A10
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic Disorders of Manganese Metabolism.
PMID: 31089831
Curr Neurol Neurosci Rep Β· 2019
1.00
2
NR4A1 is a HIF-dependent repressor of SLC30A10 transcription that controls manganese homeostasis.
PMID: 40945722
J Biol Chem Β· 2025
0.90
3
Genotype-Phenotype Relations for the Dystonia-Parkinsonism Genes
PMID: 40362326
Int J Mol Sci Β· 2025
0.80
4
The correlation and role analysis of SLC30A1 and SLC30A10 in cervical carcinoma.
PMID: 35154468
J Cancer Β· 2022
0.70
5
Molecular mechanisms of SLC30A10-mediated manganese transport.
PMID: 41022720
Nat Commun Β· 2025
0.60