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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SLC30A6
solute carrier family 30 member 6
Chromosome 2 · 2p22.3
NCBI Gene: 55676Ensembl: ENSG00000152683.14HGNC: HGNC:19305UniProt: B3KU87
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
zinc:proton antiporter activityzinc ion transmembrane transporter activityprotein bindingregulation of zinc ion transporthereditary spastic paraplegia 4Autosomal dominant spastic paraplegia type 4androgenetic alopeciarespiratory system disease
✦AI Summary

SLC30A6 (ZnT6) is a zinc transporter that lacks intrinsic transporter activity independently but functions as a key component of a heterodimeric zinc:proton antiporter complex with SLC30A5, mediating zinc entry into organelles along the secretory pathway 123. This heterodimer regulates zinc homeostasis within the early secretory pathway and supports activation and folding of enzymes including alkaline phosphatases and those involved in phosphatidylinositol glycan anchor biosynthesis 134. SLC30A6 is upregulated in colorectal cancer tissues and localizes to endoplasmic reticulum membranes as part of a coordinated transcriptional program associated with increased early secretory pathway activity 5. In pancreatic ductal adenocarcinoma, elevated SLC30A6 expression correlates with poor prognosis (HR=1.90, p=0.003) and is involved in epithelial-mesenchymal transition, TNF-α signaling, and angiogenesis pathways 6. SLC30A6 has been identified as a genetic target in chr2 back pain 7 and erectile dysfunction 8 through genome-wide and transcriptome-wide association studies. Cardiomyocyte overexpression of SLC30A6 induces mitochondrial dysfunction, altered epigenetic modifications, and impaired cardiac function 9.

Sources cited
1
SLC30A6 forms functional zinc:proton antiporter with SLC30A5 and contributes to zinc homeostasis in early secretory pathway
PMID: 15994300
2
SLC30A6 heterodimer mediates zinc entry into secretory pathway organelles
PMID: 19366695
3
SLC30A6 zinc:proton antiporter regulates enzyme activation and folding in early secretory pathway
PMID: 19759014
4
SLC30A6 regulates activation and folding of specific enzymes including those in phosphatidylinositol glycan anchor biosynthesis
PMID: 35525268
5
SLC30A6 transcript upregulated in colorectal cancer tissues; localized to endoplasmic reticulum membranes
PMID: 30129075
6
SLC30A6 elevated expression associates with poor overall survival in pancreatic ductal adenocarcinoma and EMT/angiogenesis pathways
PMID: 40282424
7
SLC30A6 identified as drug target gene in genetic variants associated with chronic back pain
PMID: 39934103
8
SLC30A6 identified as susceptibility gene for erectile dysfunction through cross-tissue transcriptome-wide association study
PMID: 40145662
9
SLC30A6 overexpression induces cardiomyocyte mitochondrial dysfunction and epigenetic modifications
PMID: 38091184
Disease Associationsⓘ20
Autosomal dominant spastic paraplegia type 4Open Targets
0.53Moderate
hereditary spastic paraplegia 4Open Targets
0.53Moderate
androgenetic alopeciaOpen Targets
0.24Weak
respiratory system diseaseOpen Targets
0.06Suggestive
breast cancerOpen Targets
0.04Suggestive
musculoskeletal system diseaseOpen Targets
0.04Suggestive
Graves diseaseOpen Targets
0.03Suggestive
Alzheimer diseaseOpen Targets
0.02Suggestive
goutOpen Targets
0.02Suggestive
prostate cancerOpen Targets
0.02Suggestive
cancerOpen Targets
0.01Suggestive
psoriasisOpen Targets
0.01Suggestive
pancreatic adenocarcinomaOpen Targets
0.01Suggestive
cervical carcinomaOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
posterior cortical atrophyOpen Targets
0.01Suggestive
Pick diseaseOpen Targets
0.01Suggestive
sporadic amyotrophic lateral sclerosisOpen Targets
0.01Suggestive
lumbar disc degenerationOpen Targets
0.00Suggestive
metabolic diseaseOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SLC30A4Protein interaction89%SLC39A7Protein interaction89%SLC39A14Protein interaction89%SLC39A6Protein interaction89%SLC39A9Protein interaction89%ALPLProtein interaction89%
Tissue Expression6 tissues
Heart
100%
Lung
82%
Ovary
80%
Liver
74%
Brain
66%
Bone Marrow
34%
Gene Interaction Network
Click a node to explore
SLC30A6SLC30A4SLC39A7SLC39A14SLC39A6SLC39A9ALPL
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q6NXT4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.00LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.72 [0.52–1.00]
RankingsWhere SLC30A6 stands among ~20K protein-coding genes
  • #7,614of 20,598
    Most Researched61
  • #9,655of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedSLC30A6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Multi-ancestry meta-analysis of genome-wide association studies discovers 67 new loci associated with chronic back pain.
PMID: 39934103
Nat Commun · 2025
1.00
2
An Overexpression of SLC30A6 Gene Contributes to Cardiomyocyte Dysfunction via Affecting Mitochondria and Inducing Activations in K-Acetylation and Epigenetic Proteins.
PMID: 38091184
Biochem Genet · 2024
0.90
3
A cross-tissue transcriptome-wide association study reveals novel susceptibility genes for erectile dysfunction.
PMID: 40145662
Andrology · 2026
0.80
4
The correlation and role analysis of SLC30A1 and SLC30A10 in cervical carcinoma.
PMID: 35154468
J Cancer · 2022
0.70
5
Metallothionein and Zinc Transporter Expression in Circulating Human Blood Cells as Biomarkers of Zinc Status: a Systematic Review.
PMID: 27422508
Adv Nutr · 2016
0.60