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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC39A5
solute carrier family 39 member 5
Chromosome 12 Β· 12q13.3
NCBI Gene: 283375Ensembl: ENSG00000139540.13HGNC: HGNC:20502UniProt: Q6ZMH5
20PubMed Papers
21Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeBMP signaling pathwayeye developmentbasolateral plasma membranemyopiaRare isolated myopiaBarrett's esophagusgastric cancer
✦AI Summary

SLC39A5 is a zinc transporter that mediates zinc influx across the plasma membrane, particularly in intestinal, pancreatic, and ocular tissues 1. The protein functions as a saturable, temperature- and concentration-dependent uniporter that regulates intracellular zinc homeostasis and participates in transepithelial zinc transport 1. Beyond zinc transport, SLC39A5 regulates multiple signaling pathways: it modulates TGF-Ξ² signaling through zinc-dependent Smad stabilization, affecting extracellular matrix synthesis critical for ocular development 2; it influences glucose homeostasis through IL-6/STAT3-mediated suppression of glucagon secretion in pancreatic Ξ±-cells 3; and it activates PI3K/AKT and BATF-dependent pathways in cancer cells 45. Clinically, SLC39A5 mutations cause autosomal dominant myopia 24, with dysfunction impairing extracellular matrix synthesis in the sclera 26. SLC39A5 variants also associate with human height variation 7 and show protective effects against type 2 diabetes when inactivated 8. Additionally, SLC39A5 upregulation in gastric and lung cancers promotes malignant progression, suggesting therapeutic targeting potential 45. Zinc supplementation enhances intestinal adaptation in short bowel syndrome through SLC39A5-mediated pathways 1.

Sources cited
1
SLC39A5 is a transepithelial zinc transport pathway gene upregulated in intestinal adaptation and short bowel syndrome; zinc supplementation improves outcomes
PMID: 39375337
2
SLC39A5 promotes gastric cancer progression via zinc-dependent PIM1 kinase activation, BATF phosphorylation, and PI3K/AKT pathway activation
PMID: 40992658
3
SLC39A5 mutations are associated with early-onset high myopia in families with genetic variants
PMID: 37191617
4
SLC39A5 variants at chromosome 12q13.3 are genome-wide significantly associated with human height in Taiwanese population
PMID: 34270706
5
SLC39A5 dysfunction impairs TGF-Ξ² signaling through zinc deficiency, reducing extracellular matrix protein synthesis and contributing to high myopia pathogenesis
PMID: 34302427
6
SLC39A5 promotes lung adenocarcinoma cell proliferation by activating PI3K/AKT signaling and correlates with poor patient survival
PMID: 34252710
7
IL-6/STAT3 signaling downregulates SLC39A5, reducing cytosolic zinc and increasing glucagon secretion; SLC39A5 suppression improves glucose tolerance in obesity and type 2 diabetes
PMID: 37380017
8
Loss-of-function variants in SLC39A5 elevate hepatic zinc, activate AMPK/AKT signaling, improve liver function and glucose homeostasis, and reduce type 2 diabetes risk
PMID: 39671241
Disease Associationsβ“˜21
myopiaOpen Targets
0.64Moderate
Rare isolated myopiaOpen Targets
0.37Weak
Barrett's esophagusOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.07Suggestive
psoriasisOpen Targets
0.07Suggestive
psoriasis vulgarisOpen Targets
0.06Suggestive
Hyperlipoproteinemia type 1Open Targets
0.06Suggestive
type 2 diabetes mellitusOpen Targets
0.06Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
esophageal cancerOpen Targets
0.05Suggestive
risk-taking behaviourOpen Targets
0.05Suggestive
esophageal adenocarcinomaOpen Targets
0.05Suggestive
FTH1-related iron overloadOpen Targets
0.05Suggestive
hemochromatosis type 5Open Targets
0.05Suggestive
zinc deficiency, transient neonatalOpen Targets
0.04Suggestive
isolated hyperferritinemiaOpen Targets
0.04Suggestive
hereditary chronic pancreatitisOpen Targets
0.04Suggestive
coronary artery diseaseOpen Targets
0.04Suggestive
chronic pancreatitisOpen Targets
0.04Suggestive
autosomal recessive hypophosphatemic ricketsOpen Targets
0.04Suggestive
Myopia 24, autosomal dominantUniProt
Pathogenic Variants4
NM_173596.3(SLC39A5):c.227dup (p.Gln77fs)Likely pathogenic
Myopia 24, autosomal dominant
β˜…β˜†β˜†β˜†2020β†’ Residue 77
NM_173596.3(SLC39A5):c.931C>T (p.Arg311Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2017β†’ Residue 311
NM_173596.3(SLC39A5):c.141C>G (p.Tyr47Ter)Likely pathogenic
Myopia 24, autosomal dominant
β˜…β˜†β˜†β˜†β†’ Residue 47
NM_173596.3(SLC39A5):c.911T>C (p.Met304Thr)Pathogenic
Myopia 24, autosomal dominant
β˜†β˜†β˜†β˜†2014β†’ Residue 304
View on ClinVar β†—
Related Genes
SLC30A1Protein interaction78%SLC30A5Protein interaction77%SLC30A7Protein interaction77%SLC30A2Protein interaction75%SLC30A4Protein interaction73%SLC30A6Protein interaction73%
Tissue Expression6 tissues
Liver
100%
Ovary
0%
Bone Marrow
0%
Lung
0%
Heart
0%
Brain
0%
Gene Interaction Network
Click a node to explore
SLC39A5SLC30A1SLC30A5SLC30A7SLC30A2SLC30A4SLC30A6
PROTEIN STRUCTURE
Preparing viewer…
PDB7YF2 Β· 1.69 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.10LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.85 [0.67–1.10]
RankingsWhere SLC39A5 stands among ~20K protein-coding genes
  • #14,267of 20,598
    Most Researched20
  • #3,859of 5,498
    Most Pathogenic Variants4
  • #11,296of 17,882
    Most Constrained (LOEUF)1.10
Genes detectedSLC39A5
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Xenotransplanted human organoids identify transepithelial zinc transport as a key mediator of intestinal adaptation.
PMID: 39375337
Nat Commun Β· 2024
1.00
2
SLC39A5 promotes the malignant progression of gastric cancer by activating BATF phosphorylation.
PMID: 40992658
J Biol Chem Β· 2025
0.90
3
Familial Whole Exome Sequencing Study of 30 Families With Early-Onset High Myopia.
PMID: 37191617
Invest Ophthalmol Vis Sci Β· 2023
0.80
4
Genome-wide association study in the Taiwan Biobank identifies four novel genes for human height: NABP2, RASA2, RNF41 and SLC39A5.
PMID: 34270706
Hum Mol Genet Β· 2021
0.70
5
SLC39A5 dysfunction impairs extracellular matrix synthesis in high myopia pathogenesis.
PMID: 34302427
J Cell Mol Med Β· 2021
0.60